BAC Information

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BAC

Clone NameMSMg01-417D11
Chromosome7 (Build37)
Map Location 135,535,894 - 135,536,422
singlet/doubletsinglet
Overlap geneRgs10
Upstream geneE430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781
Downstream geneLOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417D11.T7 (MSMg01no417_d11.b1)MSMg01-417D11.TJ (MSMg01no417_d11.g1)
ACCAG512849AG512850
length744748
length of high quality
(start - end)		533 (49 - 581)452 (80 - 531)
definitionCHROMAT_FILE: MSMg01no417_d11.b1 PHD_FILE: MSMg01no417_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:02 2005CHROMAT_FILE: MSMg01no417_d11.g1 PHD_FILE: MSMg01no417_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTCTCTTAAACCTGCGCTGGTTGGGAGCAGGGTTTCAGGC
TGACTTCCTACCCAGTGTGGGTGCAAGCCAGGCTTCATAGCACCTGCAGG
AAGGGCCCTGACCTGTGCCTGGAAGGAGCCGAGACCGGATACATCTATCT
GTCTGTCTCAGGGAAGGGAGGGCTGTGGTGGAGGCGGTGGCTAGGTGCGT
ATGCCAGCACTTTCACACACTCAGAACTGACTCCAGCAAGGGAGCTAGTC
TGTTCTTATTCTTACAGCAGCGGCGGCGGCTAGAACAGGGTTAACAAAAC
TCTGGAAAAATCTACCAGAATAGCTCAAGCGAGCAGTTCTTCTTTTCTGT
TCAAGTCTCGGCCTGGACACCAGGCCTTCCCGTGACTGGCCTGTGGTCAG
CTGTCTCAGGGTTTCCCTTTTCGGTCACACTTCCTATCCTAGCGCAGATA
AACCTGCTCACTCGTTCTCCTGCACCCACTGGGTCAGCCCAGGGGCGAAC
CCTGTCCTCAGCGGCTGGGGAAGGACAGCTGACTCATGATGGCTGGTTGA
TAGTGCCCCCTCCCCCCACACCTGCTTCCTCTCCCTTGTGTCACCTGCCC
CCACATATGGAGCCCCTAGCTGCTCACTTCTGTGTCTCATTTTCAGAATT
CCCCCAGGAAAATTCTGAGTCATGGTAGCTCTCGCGCGGTGTTG

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCTCCACATTCTGGACCC
TCCAATAGATCTCTTTTATGAGATTTGCTGTCCGGTGTGACTCTCTCATC
GGAAGAAGCCTAGAAGCAATGAAAAGAAGCAGCAAAGAAGTGGGGTGTGG
ATCCTGAGCACAGTTGGAGATACCCTCCCCTGGGAGCTGCAATGCCTCTG
TTGAGGCTTTCTCTCAGAGCTATGTGGCTTCTGCTCCACCCCACCCCACC
CTCAGTGTCTCAGGATGCCTTTCCACTGGGATACCTTTCCCATTCACAGC
TGGCTTCTGAGTCCCAGGAGACCTTCCATCTGAGCAGAAACACAGATGGG
AACACCTTACTAGAACATATGGCTGGCTGAAAACTCAAGAGATCTGCTTG
ATTATCCCCAGGAGTATTGGGATTAGAAGTATGTACAACCATGTCTGACA
TGAAACTCTTGCTGGCCTTGCATCTGCAAGGTCATAAAATTCTGTTTCCC
ATTACTGCCTGCATCTGAGCCTGTCTGGATATTACCTATTCCCTCACTTG
AAATTATGAGCCCTGGGACACACTCTTTTGGAGTTGAACTACTATATGTT
CATCGTCTCTTCTAAGCCCGTCCTTTCTCATCTTTTCCTTTCACTGGCTT
CTTTTCTCTCTACCTTCCTTTGCACTGGGATTCCATTTTTCTATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_d11.b1 MSMg01no417_d11.b1 CHROMAT_FILE:
MSMg01no417_d11.b1 PHD_FILE: MSMg01no417_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:02 2005
         (533 letters)



>mm_chr7_135535690_135536622
          Length = 933

 Score =  938 bits (485), Expect = 0.0
 Identities = 518/529 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttctcttaaacctgcgctggttgggagcagggtttcaggctgacttcctacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattcacttctcttaaacctgcgctggttgggagcagggtttcaggctgacttcctacc 674

                                                                       
Query: 65  cagtgtgggtgcaagccaggcttcatagcacctgcaggaagggccctgacctgtgcctgg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cagtgtgggtgcaaaccaggcttcatagcacctgcaggaagggccctgacctgtgcctgg 614

                                                                       
Query: 125 aaggagccgagaccggatacatctatctgtctgtctcagggaagggagggctgtggtgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaggagccgagaccggatacatctatctgtctgtctcagggaagggagggctgtggtgga 554

                                                                       
Query: 185 ggcggtggctaggtgcgtatgccagcactttcacacactcagaactgactccagcaaggg 244
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 553 ggcagtggctaggtgcatatgccagcactttcacacactcagaactgactccaccaaggg 494

                                                                       
Query: 245 agctagtctgttcttattcttacagcagcggcggcggctagaacagggttaacaaaactc 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 493 agctagtctgttcttattcttacagcggcggcggcggctagaacagggttaacaaaactc 434

                                                                       
Query: 305 tggaaaaatctaccagaatagctcaagcgagcagttcttcttttctgttcaagtctcggc 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggaaaattctaccagaatagctcaagcgagcagttcttcttttctgttcaagtctcggc 374

                                                                       
Query: 365 ctggacaccaggccttcccgtgactggcctgtggtcagctgtctcagggtttcccttttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctggacaccaggccttcccgtgactggcctgtggtcagctgtctcagggtttcccttttc 314

                                                                       
Query: 425 ggtcacacttcctatcctagcgcagataaacctgctcactcgttctcctgcacccactgg 484
           ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 313 ggtcacacttcctatcctagcgcagataagcctgctcactcattctcctgtacccactgg 254

                                                            
Query: 485 gtcagcccaggggcgaaccctgtcctcagcggctggggaaggacagctg 533
           ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 253 gtcagcccaggggcgcaccctgtcctcagtggctggggaaggacagctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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