BAC Information

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BAC

Clone NameMSMg01-417L08
Chromosome7 (Build37)
Map Location 65,262,930 - 65,263,287
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L08.T7 (MSMg01no417_l08.b1)MSMg01-417L08.TJ (MSMg01no417_l08.g1)
ACCAG513225AG513226
length755768
length of high quality
(start - end)
488 (72 - 559)461 (80 - 540)
definitionCHROMAT_FILE: MSMg01no417_l08.b1 PHD_FILE: MSMg01no417_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:40 2005CHROMAT_FILE: MSMg01no417_l08.g1 PHD_FILE: MSMg01no417_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAAATGTACAAGGAATAAGAGAGGAAGCCTTTTGGTTGTT
TATAAGTGAAATTTGTATAAGCTTGTAAGTTCAGAAAACACAATTTAACT
GGTAAAGATGAAACTGTCATATAACCTAATTGAGCAGTACAAAAGCTTTA
TTTTTCAATAAGTTCCTAATAATAAGTTTAGCTATAAAGTCACAGATTAA
ACAATGTATTGATAATAGGTGACTTAAATACATCATTATATCCAATAGAT
GAGTGATCCAGGAAAAAAAAACTGAACATAAATATTGACATTGAATGATA
TACATCAAATGGACCTAACAAGTGTTGACAGAACATTCAATCCAAAAACT
AAATAACACTCTTTTCTGTAGCCCAAGGAATTTTCTTCAAAACTGTTCAT
AAATTAGGACATTAATTATAGAATATCTAGTTCTATCTCCATCTTCCCCC
CTACTCACCATGTCTATTCTATGTTCACTTCCAAATGAGATTTGTGTGTC
ATGTTTTGAGCCCTTCTTGTTAGTTAGCATCTCTGAATCTGTGGATTGCA
GGATCATTATTCTTTACTTTCCAGCCAGTGTCTACTGACACATAAGCACA
TGCCATGTTTGTCCTTTTTGGGGCTAGGTTACCTTGTTTACGATGATTTT
TCTTTTGGTTCCACCCGCCTGCCCGCTTTTTCCTGACATCCTTGTTTTAA
AATCG
NNCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGCAATGTTAAAAGAAAA
TGTGTCCTTTCTGTCTCCTCAGAATTAAAGGGCTAGGGCCACAGGATGCT
AAGTCACAGGATAATCAAAAGAAACATGGAGTAGTGGCTGGATTAATTTG
TAAAATAAAAGACTAGGCTTATGATCTGTAAGAAATGAGCTATGCAGAGA
GGTTTTATAATGAAAAGAGAGAAATGCTTGGAGAATGAGCATGAGCAGAA
CATAGAGAGACCTGTCTGGAGATCTCCAGAGAGAGCAGAACTTAGAGAAA
GCTATCTGGAAAGCTCTCTTGAACAGAACATAGTTCATCAGCTTGGACCC
ACAGTTTGACTTCAAGTCATTTAATTCACCTCTCCCAGAAACCTCTTCCT
TAAAATCCCTCTCCAAGCCGACCAAGGCTGGTGCTTGGCATAAGAGGCTG
GCTCTTGCACCACATCAGGGTCTTGCTTGGGTCTGTTTGAACCTGGTTTG
CGTGTGGAGGAATGAAACATTGCATGGCTTACATGATTGCCTTAGTGATA
CGGGAAAAAAAAAAAAGAAAAATCTTAGGTCACCCCCATATAATATCTGG
CCCCCCTTCACCCTACTTTACCTCTAAAGGACGAATCCTCTCCCCTTTTA
CTTCTCTTTTCCTTTCAATGTCTCTTTTTTTCTTTCACACATTTTCCCCT
CCCTCCCCTATTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l08.b1 MSMg01no417_l08.b1 CHROMAT_FILE:
MSMg01no417_l08.b1 PHD_FILE: MSMg01no417_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:40 2005
         (488 letters)



>mm_chr7_65262930_65263817
          Length = 888

 Score =  669 bits (346), Expect = 0.0
 Identities = 355/358 (99%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   aataagagaggaagccttttggttgtttataagtgaaatttgtataagcttgtaagttca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aataagagaggaagccttttggttgtttataagtgaaatttgtataagcttgtaagttca 299

                                                                       
Query: 63  gaaaacacaatttaactggtaaagatgaaactgtcatataacctaattgagcagtacaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaaaacacaatttaactggtaaagatgaaactgtcatataacctaattgagcagtacaaa 239

                                                                       
Query: 123 agctttatttttcaataagttcctaataataagtttagctataaagtcacagattaaaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agctttatttttcaataagttcctaataataagtttagctataaagtcacagattaaaca 179

                                                                       
Query: 183 atgtattgataataggtgacttaaatacatcattatatccaatagatgagtgatccagga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 178 atgtattgataataggtgacttaaatacatcattatatccaatagatgaatgatccagga 119

                                                                       
Query: 243 aaaaaaaa-ctgaacataaatattgacattgaatgatatacatcaaatggacctaacaag 301
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 118 aaaaaaaaactgaacataaatattggcattgaatgatatacatcaaatggacctaacaag 59

                                                                     
Query: 302 tgttgacagaacattcaatccaaaaactaaataacactcttttctgtagcccaaggaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tgttgacagaacattcaatccaaaaactaaataacactcttttctgtagcccaaggaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)