BAC Information

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BAC

Clone NameMSMg01-417L20
Chromosome7 (Build37)
Map Location 53,927,472 - 53,927,988
singlet/doubletsinglet
Overlap geneTph1
Upstream geneSec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
Downstream geneSaal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L20.T7 (MSMg01no417_l20.b1)MSMg01-417L20.TJ (MSMg01no417_l20.g1)
ACCAG513249AG513250
length765777
length of high quality
(start - end)		407 (43 - 449)517 (73 - 589)
definitionCHROMAT_FILE: MSMg01no417_l20.b1 PHD_FILE: MSMg01no417_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:43 2005CHROMAT_FILE: MSMg01no417_l20.g1 PHD_FILE: MSMg01no417_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTATACCAGGCTGGCCTCGAACTCAAGGAGATCCACCTGGCTC
TGCCTCCTGAGTGCTGGAGTTAACGATGTAAGCTGCCACCACTGTCTTGC
TTAAGGTGTATTCTTTTTTCTTTCTTTCTTTCTTTCTTTATGTATATGAT
TACACTATAGCTGTCTTCAGACAACCAGAAGGCGGCATTGGATCTTATTA
CAGATGGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTCAGGACCT
CTGGAAGAGCAGTCAGTGCTCTTAACCATTCTCCAGCCATTTCTCCAGCC
CCTAAGGTGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAG
ACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTTTGTAAAC
CAGGCCGGCCTCAAACTCAGAAATCCACCTGCTTCTGCCTCCCAAGGTAA
GGGGGATTCTTAATACTGATTATCAGGGCATTAAAAAAAAATCGCACAAC
TACTATTACCCTTCCACCACCTGGTTGTGAATATTTTTCCCGTGTTCCTT
AACCGAATCTCGTCCCTTTGGTCGGGTTCCTGATTTTCCAAATTCCCCCG
CCATGCTTACATCACTCCCTATGCGGCCTTACAATAAACGCAAATTTATT
CCCAATTCCTCCCTTTGAACCCTTTTGCCCAACCCTATTTCATTACTTCG
CAACTCTCTCCTTTT

TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTATTTACTTTTACATCCAGACTGCG
GTTTTTCGTCCTTCCTCTCCTCTCAGTCCTTCCTCCACGCCTTCTCTCTC
CTGCATGCACTCCTCTCCCCTTTCTCTTCAGAAAAGGGGAGGCCCGTGGA
CATACTTCTAATGTTTCAGTTAACAGCCCCCATGTCTGCTGGGCATGGGG
CTGGGATGATGGCTCATCAGATAAGAGCACTTGCTGTTCTTGGGCCTGAG
TTTGGTTTCCAGCCCCGACATCAGGCAGTTCACAGCCAGCTGTAACTCAT
GCACCAGAGGATCTGACACCCTCTTCTGGCCTCTCTTGAAACCTTGGCTT
GCACTCGCGCACGCACGCACAAACACACACAGAGCAATTTGGGATTCACT
ATATTGCTCAGACTGGCCTTGAGTGACCAGGCAAGACTGCTTTAGTCTCC
CAAGTAGCTGAAACCACAGGAATGTGCTAGCACACGCAGCGTCACACGCA
CATTTTTAGAAGTGTGAACAGAGAGAGAGGGGGAAGGGAAGGAGTGCGCA
GAGGAGAACCTCATGAGAAATGTCTTATTGAATACTTTGATGAGGAAATA
TTATCTTACTATCCCCGGCACCACCGTAGAGACCCTTATATTGTAAATGT
CTCCCAATTATCACTGCCTGTCTCTACCGAGAATTTAAAAACAACCTCTA
ATTTCTCCGTACCTCTTATATAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l20.g1 MSMg01no417_l20.g1 CHROMAT_FILE:
MSMg01no417_l20.g1 PHD_FILE: MSMg01no417_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:43 2005
         (517 letters)



>mm_chr7_53927272_53928188
          Length = 917

 Score =  946 bits (489), Expect = 0.0
 Identities = 510/517 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttatttacttttacatccagactgcggtttttcgtccttcctctcctctcagtccttc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacttacttttacatccagactgcggtttttcgtccttcctctcctctcagtccttc 260

                                                                       
Query: 61  ctccacgccttctctctcctgcatgcactcctctcccctttctcttcagaaaaggggagg 120
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctccacgccttctctctcctccatgcattcctctcccctttctcttcagaaaaggggagg 320

                                                                       
Query: 121 cccgtggacatacttctaatgtttcagttaacagcccccatgtctgctgggcatggggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgtggacatacttctaatgtttcagttaacagcccccatgtctgctgggcatggggct 380

                                                                       
Query: 181 gggatgatggctcatcagataagagcacttgctgttcttgggcctgagtttggtttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gggatgatggctcatcagataagagcacttgctgttcttgggcctgagtttagtttccag 440

                                                                       
Query: 241 ccccgacatcaggcagttcacagccagctgtaactcatgcaccagaggatctgacaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ccccgacatcaggcagttcacagccagctgtaactcatgcaccagagaatctgacaccct 500

                                                                       
Query: 301 cttctggcctctcttgaaaccttggcttgcactcgcgcacgcacgcacaaacacacacag 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cttctggcctctcttgaaaccttggcttgcactcgtgcacgcacgcacaaacacacacag 560

                                                                       
Query: 361 agcaatttgggattcactatattgctcagactggccttgagtgaccaggcaagactgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaatttgggattcactatattgctcagactggccttgagtgaccaggcaagactgctt 620

                                                                       
Query: 421 tagtctcccaagtagctgaaaccacaggaatgtgctagcacacgcagcgtcacacgcaca 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtctctcaagtagctgaaaccacaggaatgtgctagcacacgcagcgtcacacgcaca 680

                                                
Query: 481 tttttagaagtgtgaacagagagagagggggaaggga 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttagaagtgtgaacagagagagagggggaaggga 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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