BAC Information

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BAC

Clone NameMSMg01-418E05
Chromosome7 (Build37)
Map Location 30,089,834 - 30,273,971
singlet/doubletdoublet
Overlap geneNeud4, Sipa1l3
Upstream geneTimm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a
Downstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418E05.T7 (MSMg01no418_e05.b1)MSMg01-418E05.TJ (MSMg01no418_e05.g1)
ACCAG513642AG513643
length768856
length of high quality
(start - end)
242 (73 - 314)362 (145 - 506)
definitionCHROMAT_FILE: MSMg01no418_e05.b1 PHD_FILE: MSMg01no418_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:25 2005CHROMAT_FILE: MSMg01no418_e05.g1 PHD_FILE: MSMg01no418_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,089,834 - 30,090,075)(30,273,610 - 30,273,971)
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCCCTCCCTTTCGGTATGTGCTCTACTCTCCTCAGAGCGCTGGCTG
CCTGCTCGGCCGGGTGACTGGACACCCGGCCGCCGGGGTCCGAGGCTAGC
CCCTCCCGGTCCCTCCTAGCTTTTTGCCACCCGATGTCAGCTTCACCTCT
TTATATCTCCCTCTCTCTGTCCTTTCTCGGGATCCCGGACTCCCGGGTCC
CTGCGCTCTCTATCCCCCACCCCCCCATCCCCTTTCCCAGGCGGTGACAG
CCGGCTCCGAGTGATTTGTGTTTGTCCGCTCCCGCCCTCTCTCCCTGCAG
GAGAGCGGTACTCCCCTCCCCCGCTCCCGGCCCGGTAGAGGAGGCGTAGT
TCGAGCGTCCGCTGTGCCGCACAAAGGTGTCGGGGTTATCTCCCTCTTTC
TCCATCCCTTGCTTTTACGGACTCGACCTTGAGCCTGGATCTCTGGTATG
TCCTGTGATGTGCGTCTTTTACTCCTACCCTTCCACTGTAATGCTTCCTG
GTACCCCCTTCCTTCTCCCTTCGCTCTTGTTTCTCCGTTTTCTTTTCTTC
CCTTTACTCTTCTTCCTCCTCCTCCTTTCCTCTTCTCCCCATTTCCCTTC
TCTTCTTTTTTCTTTTCTTTTTTCCCCATTTTCCTATTCCTTCACGTTTT
TCTCTCCCTTTTCTATCTCCCTTTCTCTTTCTTTTTTTTCCTTTCCTTCC
TATTTTCCCTTTTTTCTT
GTTTCAGTTTAGGTAGTAGAGTGAGAGGTGTAGAGTAGGTAGAGGAAGAG
TGNGGNGTTAGGTAACAGGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCA
AGTTTCTGTGATCTCCTAGAGGCGAGCACATCCAGGCCTTGAGAGTGTGG
GCTTAAAAATTCCAGTAGCTGTCAGAGTAGAAAGTGCTGGGGATTTGAAG
GTTACAGGCGTGCTGTGTGTTCTGGGACAGGGTATATAACCTCCCACGCT
TCCATAAGCACATTCTGTATATACAGCTCCCATTTAGGGTCATTTGTAAA
GCTGTGCAGCTATTACCCTAGTCCAGGGTTACAATGTTGCCATCATCCCC
AAAGCCTTGTGCAGCCTCACCCCCCACCCTGATCCCGACGTCCTGCCAAA
CTGCTACCAATCTGCTTTTCATCTTTGCGTATTTGCCTTCTCTGAGGAAC
TCAAGCATTCGTAGGGTGTTTAATAGTTTTGGTCCCCGGGCTTCTGCTAT
TCCTAATATTGTTTTGAGGCCAATCGTGCTACAGCGTGCCTTATCCTTTG
ACCTCTTTTCATTGCTAACCACTAACTTTTCTGTATGTCCTATATTCCCT
TTCGCTTCACTTTTTGCCTTTTTTTCTTTGATCCATACCCCCTGCTTTTC
CCAATTGCCACATATCTTACTACTACACGGTTACTCTCCCTTCCGCTCAT
TTCCTTCCCTTCTCTGCTCGTATTTCCCCTCCTCTTTTTTATCTTCCTCA
CCCCCTTTCCTTTCTTTCGCATATTTTNCCACCGCCTATTTTCTCGCCCT
TCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_e05.b1 MSMg01no418_e05.b1 CHROMAT_FILE:
MSMg01no418_e05.b1 PHD_FILE: MSMg01no418_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:25 2005
         (242 letters)



>mm_chr7_30089634_30090275
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctctactctcctcagagcgctggctgcctgctcggccgggtgactggacacccggccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctctactctcctcagagcgctggctgcctgctcggccgggtgactggacacccggccg 260

                                                                       
Query: 61  ccggggtccgaggctagcccctcccggtccctcctagctttttgccacccgatgtcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggggtccgaggctagcccctcccggtccctcctagctttttgccacccgatgtcagct 320

                                                                       
Query: 121 tcacctctttatatctccctctctctgtcctttctcgggatcccggactcccgggtccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacctctttatatctccctctctctgtcctttctcgggatcccggactcccgggtccct 380

                                                                       
Query: 181 gcgctctctatcccccacccccccatcccctttcccaggcggtgacagccggctccgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgctctctatcccccacccccccatcccctttcccaggcggtgacagccggctccgagt 440

             
Query: 241 ga 242
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no418_e05.g1 MSMg01no418_e05.g1 CHROMAT_FILE:
MSMg01no418_e05.g1 PHD_FILE: MSMg01no418_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:25 2005
         (362 letters)



>mm_chr7_30273586_30274347
          Length = 762

 Score =  692 bits (358), Expect = 0.0
 Identities = 361/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaagtttctgtgatctcctagaggcgagcacatccaggccttgagagtgtgggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attgcaagtttctgtgatctcctagaggcgagcacatccaggccttgagagtgtgggctt 327

                                                                       
Query: 61  aaaaattccagtagctgtcagagtagaaagtgctggggatttgaaggttacaggcgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaaattccagtagctgtcagagtagaaagtgctggggatttgaaggttacaggcgtgct 267

                                                                       
Query: 121 gtgtgttctgggacagggtatataacctcccacgcttccataagcacattctgtatatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgtgttctgggacagggtatataacctcccacgcttccataagcacattctgtatatac 207

                                                                       
Query: 181 agctcccatttagggtcatttgtaaagctgtgcagctattaccctagtccagggttacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agctcccatttagggtcatttgtaaagctgtgcagctattaccctagtccagggttacaa 147

                                                                       
Query: 241 tgttgccatcatccccaaagccttgtgcagcctcaccccccaccctgatcccgacgtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgttgccatcatccccaaagccttgtgcagcctcaccccccaccctgatcccgacgtcct 87

                                                                       
Query: 301 gccaaactgctaccaatctgcttttcatctttgcgtatttgccttctctgaggaactcaa 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 86  gccaaactgctaccaatctgcttttcatctttgtgtatttgccttctctgaggaactcaa 27

             
Query: 361 gc 362
           ||
Sbjct: 26  gc 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)