BAC Information

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BAC

Clone NameMSMg01-419C05
Chromosome7 (Build37)
Map Location 123,480,736 - 123,481,282
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13
Downstream genePik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419C05.T7 (MSMg01no419_c05.b1)MSMg01-419C05.TJ (MSMg01no419_c05.g1)
ACCAG514310AG514311
length777740
length of high quality
(start - end)
65 (138 - 202)547 (66 - 612)
definitionCHROMAT_FILE: MSMg01no419_c05.b1 PHD_FILE: MSMg01no419_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:33 2005CHROMAT_FILE: MSMg01no419_c05.g1 PHD_FILE: MSMg01no419_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCTTAAATCC
CGCGGGANCNCGAGTTTTTTCGAGTAATAGAAGAGNCGCAGGACCACAAA
TGACCCACAACACTCTTCTGTGAAGGACCAACAGAACGTAGCATATAAAG
CAGAGCAGACAACGATGCTTTAAAACCTCCTCTACCACGTCTACCTCCCT
GACGACATGGAGAAGAGATTTTTTAATAACTACTATATATCTCACAACTG
CTGCATGCTGTAGAGGACACTAGAAAATCTACTAGGATTTCTACTAAAAG
GGAACTCTATATGCTGAGGGATTTACGTGNATATAGGGGACAAGCAGGCT
TACAACAGCGCTGCTGTGTTCTACCAGCCGCTTCTTAGCTGTGCGCCGCT
CAGCATTTCTGCTTGCGTGTGGGCATCATGTGCAGGCTTGTCTGCTCATG
GTGTTCTACCATTATCACACCTAATACTCCTTTACGTACCACCATAAGGA
GTATGAGTGGTGTTATTCACAGCAGCCAGCAGACTAGAGCATCTTCCCAC
ACTATTGCATCCTCGGGTGAATACGCAGAGTTATTTTAGAACTGCCGCTG
CTTTTTTTTCAGGGGGCCTGCAGCAGGACCCCCCAGTAAATGTTGCCCCT
CCCGCCCCCAAAAATATTTGTCGGCCGCGTCGTCACACATGCCGCAAAAA
TATACCACCTTTTTCTGATGTGATGCCAANNAAAACAACCCCGCCGCTGC
GTTCCCCGTTTATTTCTAATAACACCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCAGGAATTCTTTGTTCTTGCCAGTGCTCTAGGATCTGAAGA
TGATCGTTCATCCCAAGAACCTGTTTTCTCTGAGGAATCCAATGAGACTG
GCACCAATGCTTTTTATTACTGTGTTTATGGGAATGAGTTGTTAAAGCAT
GTGTATCTTTTTTAAGTACTTTTTTTTCAAATTAAAGTTGTATATAAAGT
TCAAAATCTTGCCTTAAATTGTTTAATTCTTTCTAAGACTCATGAATTGT
AACATTTAAAAAAATTCTTTTTTGATAACTCAGATTTAAACAAACACTGA
AGACCTGCTATTATGATACACATTTACTTACACGCTGTTCACCAGCAATG
CAAACATACATGTGATTACTAGTGTCGCCTGTAAGAAGAAAATGCTTTAA
TTATATCAGCATAGTGAGTTAAGATGTATAATATTTTTATTAATACTTGG
AATATATTCATTGAATTGAATGTGACTTCATAACTATACTACAATTAAAA
TATTTCTGAAATAAAGGAACTCGGCTGTCATTTCCTTCCTTCTTGATTCA
GTATTTTGGTTTTAAACTTTAATAATTATTGCATCTTACCCAGGAGTTTG
TAATATTTATCCTGAATTTGAATGTGATTCTTTGAAGGTCAAGAAAATCC
GCTACAGCCTATCATTTCCTGAGAAAGTGAATCTGTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_c05.g1 MSMg01no419_c05.g1 CHROMAT_FILE:
MSMg01no419_c05.g1 PHD_FILE: MSMg01no419_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:33 2005
         (547 letters)



>mm_chr7_123480536_123481482
          Length = 947

 Score = 1011 bits (523), Expect = 0.0
 Identities = 541/547 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttgttcttgccagtgctctaggatctgaagatgatcgttcatcccaagaacctgtt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 747 ttctttgttcttgccagtgctctaggatctgaagatgatcgctcatcccaagaacctgtt 688

                                                                       
Query: 61  ttctctgaggaatccaatgagactggcaccaatgctttttattactgtgtttatgggaat 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 687 ttctctgaggaatccaatgagactggcaccaatgctttatattactgtgtttatgggaat 628

                                                                       
Query: 121 gagttgttaaagcatgtgtatcttttttaagtacttttttttcaaattaaagttgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagttgttaaagcatgtgtatcttttttaagtacttttttttcaaattaaagttgtatat 568

                                                                       
Query: 181 aaagttcaaaatcttgccttaaattgtttaattctttctaagactcatgaattgtaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaagttcaaaatcttgccttaaattgtttaattctttctaagactcatgaattgtaacat 508

                                                                       
Query: 241 ttaaaaaaattcttttttgataactcagatttaaacaaacactgaagacctgctattatg 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttaaaaaaattcacttttgataactcagatttaaacaaacactgaagacctgctattatg 448

                                                                       
Query: 301 atacacatttacttacacgctgttcaccagcaatgcaaacatacatgtgattactagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atacacatttacttacacgctgttcaccagcaatgcaaacatacatgtgattactagtgt 388

                                                                       
Query: 361 cgcctgtaagaagaaaatgctttaattatatcagcatagtgagttaagatgtataatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgcctgtaagaagaaaatgctttaattatatcagcatagtgagttaagatgtataatatt 328

                                                                       
Query: 421 tttattaatacttggaatatattcattgaattgaatgtgacttcataactatactacaat 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 tttattaatacttggaatatattcattgaattaaatgtgacttcataactatactacaat 268

                                                                       
Query: 481 taaaatatttctgaaataaaggaactcggctgtcatttccttccttcttgattcagtatt 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 taaaatatttctgaaataaaggaacttggctgtcatttccttccttcttgattcagtatt 208

                  
Query: 541 ttggttt 547
           |||||||
Sbjct: 207 ttggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)