Query= MSMg01no419_m02.b1 MSMg01no419_m02.b1 CHROMAT_FILE:
MSMg01no419_m02.b1 PHD_FILE: MSMg01no419_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:23 2005
(364 letters)
>mm_chr7_82875995_82876758
Length = 764
Score = 617 bits (319), Expect = 0.0
Identities = 328/331 (99%)
Strand = Plus / Minus
Query: 1 tgtgaaacccttccattgtgagcctacttcatgccctacagccagcaagagcatcaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 527 tgtgaaacccttccattgtgagcctacttcatgccctacagccagcaagagcaccaaatg 468
Query: 61 ccaactcctgagcatgtgcagggcaccttggcagctggatcccagcagtttcttatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccaactcctgagcatgtgcagggcaccttggcagctggatcccagcagtttcttatgttt 408
Query: 121 cttatctcctatcactctctgaagtttctctgggttctccagccctcctgacgccatgct 180
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 407 cttatctcctatcactctctgaagtctctctaggttctccagccctcctgacgccatgct 348
Query: 181 ttccatcctccagtattatccttctcttcaatcttcaagccttacctctctgccaggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttccatcctccagtattatccttctcttcaatcttcaagccttacctctctgccaggctt 288
Query: 241 ccttcctctcattctagcacccaccacactggagaacaagtgcctctctctttctcgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccttcctctcattctagcacccaccacactggagaacaagtgcctctctctttctcgaat 228
Query: 301 gtcggaagccagttgccaggcagggacttct 331
|||||||||||||||||||||||||||||||
Sbjct: 227 gtcggaagccagttgccaggcagggacttct 197
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space: 268025
Effective search space used: 268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_m02.g1 MSMg01no419_m02.g1 CHROMAT_FILE:
MSMg01no419_m02.g1 PHD_FILE: MSMg01no419_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:23 2005
(502 letters)
>mm_chr7_82696587_82697487
Length = 901
Score = 913 bits (472), Expect = 0.0
Identities = 497/510 (97%), Gaps = 11/510 (2%)
Strand = Plus / Plus
Query: 1 tttgattgggagacagaggctcaaatacatgactgactggtaaagtactacaagcagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tttgattgggagacagaggctcaaatacatgactgactggtaaagtactacaagcagtag 260
Query: 61 cttgttccagacagacagcaggaggagatgctgcagaactgatggggaccctcagaaagg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgttctagacagacagcaggaggagatgctgcagaactgatggggaccctcagaaagg 320
Query: 121 atagcttcgagaacaccccacttcagacgtgtaaatgttgggcttggggccagcaaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcttcgagaacaccccacttcagacgtgtaaatgttgggcttggggccagcaaacca 380
Query: 181 gaatcctgtaatcctggtgcctactaaaatctagtcatgaaccaactggacaagaaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcctgtaatcctggtgcctactaaaatctagtcatgaaccaactggacaagaaggtt 440
Query: 241 agttttattta--gcccctgatgaagccgggcggtggtggctcacgcctttaatcccagc 298
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttta---aaagcccctgatgaagccgggcggtggtggctcacgcctttaatcccagc 497
Query: 299 acttgggaggcagaggcaggtggatttctgagtttgaggccagcctgatctacaaagtga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acttgggaggcagaggcaggtggatttctgagtttgaggccagcctgatctacaaagtga 557
Query: 359 gttccaggaaagccagggctatacagagaaaccctgtctcgaacaaacaaacaaacaaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gttccaggaaagccagggctatacagagaaaccctgtctcgaacaaacaaacaaacaaac 617
Query: 419 aa-----caaaaaaaaa-ccaaagcaaacaaacaaaaaaagcccctgatgaattaaatca 472
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaacaaacaaaaaaaaaaccaaagcaaacaaacaaaaaaagcccctgatgaattaaatca 677
Query: 473 gagcagtttgggttggttaatgtcttccaa 502
||||||||||||||||||||||||||||||
Sbjct: 678 gagcagtttgggttggttaatgtcttccaa 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
