BAC Information

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BAC

Clone NameMSMg01-419M08
Chromosome7 (Build37)
Map Location 100,879,625 - 100,880,073
singlet/doubletsinglet
Overlap genenone
Upstream gene4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982, EG666816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419M08.T7 (MSMg01no419_m08.b1)MSMg01-419M08.TJ (MSMg01no419_m08.g1)
ACCAG514793AG514794
length977752
length of high quality
(start - end)		---448 (71 - 518)
definitionCHROMAT_FILE: MSMg01no419_m08.b1 PHD_FILE: MSMg01no419_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:24 2005CHROMAT_FILE: MSMg01no419_m08.g1 PHD_FILE: MSMg01no419_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGGCAATATTAAAAAGTTGGCCGACGGCTGGGCGGTAGTCATCATCGCA
CGGGCATGAATAGGGTAATAATTCGATGAAAAAGGGGTATTAACAGACGC
TCGCACAGCGTATTTGCTTTTTTTCGTTTTTTCCCACCCCGGTTTAACAC
CTGTTCAACTTATTTGGGGGGTGATAAACGTGGCTGCCGCGGCACAGTTT
GGAGTTGCTATGCCGCTTTAACCGGGTCACGGGTAGTTGCCTCGGGAAAA
ATTTTTGAATGTGGGCGAACCAACGCGGGTGTCGTATTGTGGTAAAGACA
AGCGGGAAACCGTTGTGGGGAGGGGGACGGCGGGTATTTCTTTCGGGCGC
GAGCCGATTGCACGGTATAATTAGCTCGTGCTGTGGGTACCCCACGCGCC
ACATGGGGGGGGGCGTTGATTCCTTATACCGGCCAGATTAGGGGAGTACG
AGTAGAAAGGCGTTGACGACTTTGATTAGTTTAACGAGGATAGCCCGCCC
CGGTATTTATTCGTCTTTAAGCGCGCCGCGGAAGAGTTATATCTACATCC
CCCCCCCATAATATCCGCTAACCCAATATGCGGTCCTGTTTTTCGCCCAA
ATTTTATACACACTTTTGTTCCCCCCCCCATATTACCTTTTTCCCCCGCC
ACTCCATTTTTTTATCTCTTCTTTTCCGCGCCTTTGCGCCCAATTTTTTT
TATGCTTTTTCGGAGCACTTGTGGAGGAATGCACTTTGTGTCACATTTAA
AATAAACCCCCATTCGTGTGGGGGGCTTCCCCTTCTTGTGAAAATTGTTA
CCTCATTATATTTTTCGCTGGCCCCGCTTGGAGTTATTCCCCTGTAACGC
CCCCCTTTATCTTTGTTATTTTCTGCCCGCGGGGGGAATCTTATTTTTTC
CCCCCCCATGGCGGGNCCCGAANNNNTAAAACAACTTTTGGTTNCCCNNG
NCNGGCAACNNNGNAGTTTAAGCCATN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGAACTGGTGTTTCAGATAGTTTGTAA
TTTGAATGGGTTCTACGAATTGCATCCATGTCCACTGGAATAACAGCCAG
TGCTCTTAACCATTCCTTTAGCCCAAATTCTATTCTTCCACTCTTTGGTA
AAATAATAGATAGTTTGGGAAGCTTGAGGTATGAGATCCTCCACTCCACA
AAATCAGAGATATACGTGAAAGTCATTTTCCCTTGAGAGAAGGACCGTAG
CATGTAGGACCACTATGTATCCCCCCAGCACCCTACGGGCATACAAAACA
ACATCCTGGTATTTTTGCTCTAAATTTAATATGGCTTTTAAAGAAGGAAC
AAAACTGAAGGAGGCATTGTTTAAGATAAAAATAAAAAATAAGGAAACTT
GGAGGTTGCTCTGGGAAAGACTGACTGCAAAGGTTGATTGATTGATTCAT
TACAACTTTAATGATGTGAAGAGATTGGAGGTTTGTAGGTCCAGAGCCAA
ATTATCTGGGGCTATCTTTAGCTCTCTAATAACTATAATTGCCCTCCTGC
ATGTGACTTAATGTCTGTATGATTAATAAACAAATTACTTGGAATACACC
GTGATTCCTATAATCCACCACCCCAAATTCATAAGTATCTTCCGAAAAAG
TCTGAGGCCTAAAAAAAAAAATTTTTCTAATTTGCGGAAACCCTAAGGCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_m08.g1 MSMg01no419_m08.g1 CHROMAT_FILE:
MSMg01no419_m08.g1 PHD_FILE: MSMg01no419_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:24 2005
         (448 letters)



>mm_chr7_100879321_100880169
          Length = 849

 Score =  783 bits (405), Expect = 0.0
 Identities = 438/449 (97%), Gaps = 1/449 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaactggtgtttcagatagtttgtaatttgaatgggttctacgaattgcatccatg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tctggaactggtgtttcagacagtttgtaatttgaatgggttctacgaattgcatccatg 694

                                                                       
Query: 61  tccactggaataacagccagtgctcttaaccattcctttagcccaaattctattcttcca 120
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tccactgaaagaacagccagtgctcttaaccattcctttagcccaaattctattcttcca 634

                                                                       
Query: 121 ctctttggtaaaataatagatagtttgggaagcttgaggtatgagatcctccactccaca 180
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 633 ctctttggtaaaataatagatagctcgggaagcttgaggtatgagatcctccactccaca 574

                                                                       
Query: 181 aaatcagagatatacgtgaaagtcattttcccttgagagaaggaccgtagcatgtaggac 240
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 573 aaatcagagatatacgtgaaagtcattttcccttgagagaaggacaatagcatgtaggac 514

                                                                       
Query: 241 cactatgtatccccccagcaccctacgggcatacaaaacaacatcctggtatttttgctc 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 513 cactatgtatccccccagcaccctacaggcatacaaaacaacatcctggtatttttgctc 454

                                                                       
Query: 301 taaatttaatatggcttttaaagaaggaacaaaactgaaggaggcattgtttaagataaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 453 taaatttaatatggcttttaaagaaggaacaaaactgaaggaggcattgtttaaaataaa 394

                                                                       
Query: 361 aataaaaaa-taaggaaacttggaggttgctctgggaaagactgactgcaaaggttgatt 419
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 393 aataaaaaaataaggaaacttggaggttgctccgggaaagactgactgcaaaggttgatt 334

                                        
Query: 420 gattgattcattacaactttaatgatgtg 448
           |||||||||||||||||||||||||||||
Sbjct: 333 gattgattcattacaactttaatgatgtg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 849
Length adjustment: 10
Effective length of query: 438
Effective length of database: 839
Effective search space:   367482
Effective search space used:   367482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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