BAC Information

Click to search

BAC

Clone NameMSMg01-419N10
Chromosome7 (Build37)
Map Location 141,376,953 - 141,377,369
singlet/doubletsinglet
Overlap geneAdam12
Upstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1
Downstream geneA130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419N10.T7 (MSMg01no419_n10.b1)MSMg01-419N10.TJ (MSMg01no419_n10.g1)
ACCAG514845AG514846
length770773
length of high quality
(start - end)
---422 (77 - 498)
definitionCHROMAT_FILE: MSMg01no419_n10.b1 PHD_FILE: MSMg01no419_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:30 2005CHROMAT_FILE: MSMg01no419_n10.g1 PHD_FILE: MSMg01no419_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAAGCTTATTCCGAATAAGATCGGAGGAGGGCCGTTCCCAAACGGTGC
CGTTTCTTGTTTTCTTTTTTTTTAGCGTGCAGTGTTTTCTTTTTGGCCGA
TGGGAGTAGCGCGTTAAGCTATCCGTTCCATTTGTGAATTCCCCCCACAC
GTTGTCCCCGCGACCCATGCCTAATTTCCCAGGCAAAAAAGTTATGTAAA
ACCGAAAAACGAATAAACGCAGGTTACTTATATAGGCGAAGAAGGGACAG
GGAGCGACGAAAAATCGCCTACCCACTATTCGCGCGCGCCCGCCCTAATT
AGGCGCGCTGCTAGATACCCCTATGTATCCCTTGGGCCAAATACTCGCCA
TTCGTGGCCAATGGACTAGAGGGGCGCGGAAAAAAAGAAAACCCGTCGCG
GGGGGCGGACCAATGCGGTCCTCGTAGGCTCCAACGCTATAACAGCTCTT
GTGCCTTTGGGGTTGGTCACACCAGCCTAATATGTTTCCAATGCGGGACT
CCCCGTTATGTTAGCGCCTGTTAACGTAACTGAAAAGCGCGCCTTTTTTA
CATGCGGACGCGAAACAATAAACAAAGTGGAGATTCGCGTCACCGCAACA
CAAGCGGCTACGCGAGGGATAAAAACCGCGCCGGTAAAATAATTATTGTT
GCCACTTTTGCCACGCCAGCCCCGTCTCGACACATTTTCGGAAACGTTCC
AGAGAAAAAAATGGGTTTTATAACGCCCCCGCCCTATATTCCCCGCGCCC
ACATAGACATAATATCACTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGTATTCTTCACTTCTGTCTATCTC
ACCCAAGCACAGTCCAAACTATCTCCTGGGCTTGCTGATTTCGGTCTTCT
CAGCAGTGTGGCCTCCTTTCCAACATGCTTAAAATTAAGAAAGGTTTTGT
CTCCCTCCTTTGATCATGTCAGCACCACTTCCCTACATGAGTGGGTGGCT
TCTTCTTTGACACACTCTTTGTTTTATCAAGTCAACTAGTCCAGTTGAGT
GTTTGGCTCTTGTTCTCTCTTTCTGACTTCTAAAACCAGTACTACTTAAT
GAACACTGCCATCATCCAGTTTAAAATCTACCAATTGATGCAGTCCTTCA
TCTAAATGGACTTTAGTTCTCTGAGAAGCTAGTCTTGATATCTGAGAGCC
CAGCACCAAGTACTAGAACAGAGTAGCTGGCAATGCCTGAAACTGGCTTG
AGGCGCATACTGGTTCTCCCTCTAATCTTAAAAGAGAAAGACATTGGATA
AGAGAAAAATGCCTGTCCAGGGGTTTGGGCATTTTTGTTTGTTTGAGTGG
CCGGTTGTTTTTCCGGAGAAAATGCTCGTAACAGCCCAATGGTGTCCTTG
GAATCATTTTATTTTTTTTATAACCACTTGCGTTTAAACAGGGTATTCGT
TTCTCTAATAAAATTAAATAAACCCTTTTTTCGGGCTCCCCCTCCTAAAC
TATTCTATTTATTTTCCCTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_n10.g1 MSMg01no419_n10.g1 CHROMAT_FILE:
MSMg01no419_n10.g1 PHD_FILE: MSMg01no419_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:30 2005
         (422 letters)



>mm_chr7_141376750_141377569
          Length = 820

 Score =  783 bits (405), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 2/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttcttcacttctgtctatctcacccaagcacagtccaaactatctcctgggcttgctgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttcttcacttctgtctatctcacccaagcacagtccaaactatctcctgggcttgctgat 263

                                                                       
Query: 64  ttcggtcttctcagcagtgtggcctcctttccaacatgcttaaaattaagaaaggttttg 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcagtcttctcagcagtgtggcctcctttccaacatgcttaaaattaagaaaggttttg 323

                                                                       
Query: 124 tctccctcctttgatcatgtcagcaccacttccctacatgagtgggtggcttcttctttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctccctcctttgatcatgtcagcaccacttccctacatgagtgggtggcttcttctttg 383

                                                                       
Query: 184 acacactctttgttttatcaagtcaactagtccagttgagtgtttggctcttgttctctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 acacactctttgttttatcaagtcaactagtccagttgagtgtttggctcttgttctct- 442

                                                                       
Query: 244 tttctgacttctaaaaccagtactacttaatgaacactgccatcatccagtttaaaatct 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 -ttctgacttctaaaaccagtactacttaatgaacactgccatcatccagtttaaaatct 501

                                                                       
Query: 304 accaattgatgcagtccttcatctaaatggactttagttctctgagaagctagtcttgat 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 accaattgatgcagtccttcatctaaatggactttaattctctgagaagctagtcttgat 561

                                                                      
Query: 364 atctgagagcccagcaccaagtactagaacagagtagctggcaatgcctgaaactggct 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atctgagagcccagcaccaagtactagaacagagtagctggcaatgcctgaaactggct 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 820
Length adjustment: 9
Effective length of query: 413
Effective length of database: 811
Effective search space:   334943
Effective search space used:   334943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)