BAC Information

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BAC

Clone NameMSMg01-420A03
Chromosome7 (Build37)
Map Location 75,939,025 - 75,939,582
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420A03.T7 (MSMg01no420_a03.b1)MSMg01-420A03.TJ (MSMg01no420_a03.g1)
ACCAG514975AG514976
length695724
length of high quality
(start - end)
194 (96 - 289)533 (122 - 654)
definitionCHROMAT_FILE: MSMg01no420_a03.b1 PHD_FILE: MSMg01no420_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:43 2005CHROMAT_FILE: MSMg01no420_a03.g1 PHD_FILE: MSMg01no420_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCAGAGCACGGGGNGGAANNCNTACCTGATGCTACCAAAGGGTAGAGA
AGCCCCTGAAAAAAATGTTCAACATCCTTAACCATCTTGGACCTGCAAAT
CAAAACAACCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGAAAATC
AGTCTGGGGGTTCCTCAGAAAATTGGACATAGTACTACTGTAGTANTCTG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATAT
GGTACATTTACACAATGGAGTACTGCTCAGCTATTAAAAAGAATGAATTT
ATGAAATTTCTAGGCAAATGGATGTACCTAGAGGGCATCATCCTGAGTGA
GGTAACCCAATCACAAAAGAATTTGCACAATATGTACTCACTGATAAGTA
GATATTAGCCCAGAAATTTACAATACCCAAACTATAAGGCACAGTTTGCT
TAATGCATGATACTCCTGAAGAGTGAAAATGAAAGTGTGGGCACN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGCCAGCTCTCAAATACATCAAGTATCTGG
TTCAAGAAGTTATTGAGCGCTCTGGGAAGAGTTTGGTGGAAAAAGGTGTT
ATCAGAGTATTCTATGAAAAAATTAAATACAAAATAATAATAAAAGAAAG
TTACTTTAGAGCGATTAGCTTTCCACCAAATAATATGTAATATTAATGAA
ACTCTACTGGAAAGTTCTACATTTGTTTGAGGCTTTTATAGTGTTCTACT
AAAATAATTTTCCATATTTAGTTCATTTTTTACTTTATTCACTGATTCTA
GATGAAATTTTTAAAATATAGTTTCAATATTGACATCTTGCAATATAAAT
GTTTATTATTCTTATACTTTCTTAAGCCCAGTAGTCACTAGATATGTGGC
CCCAATGGCAAAATGGAAAACCTAGATTTAAACCAGCACGATAAAATGAA
ATACATACATGCATACATAATACATACATACATGCATATATATATACAAA
CATGCATACATGAATAAACCATGTGATAAACAGCACATTTTATTTTGATG
TATTTGATTACACTTTATTTTCTCCTCTTTATTTCTTCAGTTTTATTTTT
AAAATCATTTTTAGGAATTTGATATTAGCAGGTATGCCTGTTTACGTGTG
TTTAAGCATTTTCTGATCATAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_a03.g1 MSMg01no420_a03.g1 CHROMAT_FILE:
MSMg01no420_a03.g1 PHD_FILE: MSMg01no420_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:43 2005
         (533 letters)



>mm_chr7_75938930_75939862
          Length = 933

 Score =  893 bits (462), Expect = 0.0
 Identities = 524/560 (93%), Gaps = 29/560 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggaagagtttggtggaaaaaggtgttatcagagtattctatgaaaaaattaaataca 60
           |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 653 ctgggatgagtttggtggaaaaaagtgttatcagaatattctatgaaaaaattaaataca 594

                                                                       
Query: 61  aaataataataaaagaaagttactttagagcgattagctttccaccaaataatatgtaat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 593 aaataataataaaagaaagttactttagagagattagctttccaccaaataatatgtaat 534

                                                                       
Query: 121 attaatgaaactctactggaaagttctacatttgtttgaggcttttatagtgttctacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 attaatgaaactctactggaaagttctacatttgtttgaggcttttatagtgttctacta 474

                                                                       
Query: 181 aaataattttccatattta-gttcattttttactttattcactgattctagatgaaattt 239
           ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||
Sbjct: 473 aaataattttccatatttatg-tcattttttattttattcactgattctagatgaacttt 415

                                                                       
Query: 240 ttaaaatatagtttcaatattgacatcttgcaatataaatgtttattattcttatacttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttaaaatatagtttcaatattgacatcttgcaatataaatgtttattattcttatacttt 355

                                                                       
Query: 300 cttaagcccagtagtcactagatatgtggccccaatggcaaaatggaaaacctagattta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cttaagcccagtagtcactagatatgtggccccaatggcaaaatggaaaacctagattta 295

                                                                       
Query: 360 aaccagcacgataaaatgaaatacatacat----gcatacataatacatacatacat--- 412
           ||||||||||||||||||||||||||||||    |||||||||||||||||||||||   
Sbjct: 294 aaccagcacgataaaatgaaatacatacatacatgcatacataatacatacatacataca 235

                                                                       
Query: 413 -gcatatatata------------------tacaaacatgcatacatgaataaaccatgt 453
            |||||||||||                  ||||||||||||||||||||||||||||||
Sbjct: 234 tgcatatatatacatatatatatatatatatacaaacatgcatacatgaataaaccatgt 175

                                                                       
Query: 454 gataaacagcacattttattttgatgtatttgattacactttattttctcctctttattt 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gataaacagcacattttattttgatgtatttgattacactttattttctcctctttattt 115

                               
Query: 514 cttcagttttatttttaaaa 533
           | ||||||||||||| ||||
Sbjct: 114 cctcagttttatttt-aaaa 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)