BAC Information

Click to search

BAC

Clone NameMSMg01-421A08
Chromosome7 (Build37)
Map Location 35,323,250 - 35,323,736
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464
Downstream geneKctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421A08.T7 (MSMg01no421_a08.b1)MSMg01-421A08.TJ (MSMg01no421_a08.g1)
ACCAG515748AG515749
length773773
length of high quality
(start - end)
180 (73 - 252)494 (63 - 556)
definitionCHROMAT_FILE: MSMg01no421_a08.b1 PHD_FILE: MSMg01no421_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:02 2005CHROMAT_FILE: MSMg01no421_a08.g1 PHD_FILE: MSMg01no421_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGATACGCGGAATTC
AGTACTAGCCTAGCAGAAAGAGGTGGCGCATACCTTTAATCCCTGCACTT
GGGAGGCAGAGGCAGGAGAATTTCTGAGTTTGAGGCTAGCCTGGTCTACA
GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAA
AAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC
CTTTTTTTTAAAACCCAAACCAAAAAAACAAAACTGAAAGTCAAAACCAA
AAAAAACCCCCCAAACAAAACAAATAAATAATTTAAACCCCAAAACAACA
ACAACAAAACAAGGTTTATACAGTTAACTTCCAAAAAAGGGTGGCCATTG
TAACAATGTAGAAGGGTTGAAACTAGAAAATATTATAAAATTTATTTAAA
TTCTCCAGCTACTTATCAGTTTCAACTTAAGATCCCCAAAGAAACTTATA
GAAGAACATTACTCAAGTCATTTTAGGAATTCAAGTAACTTCTAATTAGT
ATGTTACATGAAGGTCCAGGAAAGGCAAAAGCCAAGCCTAACGAGGTGAA
ACTGTACCCCTGAAAGGCAATTTGCTTCAGTTACCTGAACAATAGCCGGG
CCCCGAGGACAAGAATTTTTTTTTTTTGTTGGGCTCACAAACCAGGGAAG
GCCTTTAATTACCTTGCCGGGGAAAAAAATAAATTCCAAAAATCTCATTC
TTAAGGCGCGATTGGGAACAATC
ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCCAATTCTTGCGTTCTCACTCCGCAAGGAAAATCT
CAATGATTTATTCATTTCAAATGAAAAATAGAAGGGAGATGAGAAGAATG
AGTTCACAGACGGCCTCGTTCTCGGGGCACTGGTGCGAGGCTCCCTCGCT
CACTGCCCGGAGGCCTCCGTGTTCAAGTCCCTCTAATTAACAAGGTGAAT
CAGGCGGCAGCTCTCTAATTAGTGAGCAAGACAAGCCGGCGGAAGCAGGC
AGGCAGAGTGTAGAGCTCTGCACTGGCCTTCAAAGAGCCCACTCCATTTG
AGGGGGTGGGGTGGGCAGTGCGGATATCATCTAAATAACTATAAAAAAAA
AAAGCAAAACGAAGGTGTTTGGATGGGGGAAAGCTACCTCACTTTTGTTC
TCCAAGTTCACGGGATGTCTCACAAATTCGCCAGCATAACCAACTCCTTG
CTGACTGAGGTTGGCCTCTGCTGTTTGTACAATCTTTCGGGGCACACTGT
CCCACAACATGATCATCCAAAAGACATTATCTTAGAGCTGTGGGATATAG
CTCAGTGTTTCAAGGAATTGCCTAGTACACTGAGCTTTGGGTGTATTCCC
CCGCACTACATAATCCAGGGTTGTGTGGTGCATCCACTCTCCTGCATTCT
CTGTCCCTTGGGAGCTGGGTGATAGGACTAAGGGAAATTCACGCGCCTTG
GGAAACATTTGGGTGCAGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_a08.g1 MSMg01no421_a08.g1 CHROMAT_FILE:
MSMg01no421_a08.g1 PHD_FILE: MSMg01no421_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:02 2005
         (494 letters)



>mm_chr7_35323045_35323936
          Length = 892

 Score =  880 bits (455), Expect = 0.0
 Identities = 480/489 (98%), Gaps = 2/489 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcttgcgttctcactccgcaaggaaaatctcaatgatttattcatttcaaatgaaaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aattcttgcgttctcactccgcaaggaaaatctcaatgatttattcatttcaaatgaaaa 633

                                                                       
Query: 66  atagaagggagatgagaagaatgagttcacagacggcctcgttctcggggcactggtgcg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atagaagggagatgagaagaatgagttcacagacggcctcgttctcggggcactggtgcg 573

                                                                       
Query: 126 aggctccctcgctcactgcccggaggcctccgtgttcaagtccctctaattaacaaggtg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aggctccctcgctcactgcccggaggcctccgtgttcaagtccctctaattaacaaggtg 513

                                                                       
Query: 186 aatcaggcggcagctctctaattagtgagcaagacaagccggcggaagcaggcaggcaga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aatcaggcggcagctctctaattagtgagcaagacaagccggcggaagcaggcaggcaga 453

                                                                       
Query: 246 gtgtagagctctgcactggccttcaaagagcccactccatttgagggggtggggtgggca 305
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| 
Sbjct: 452 gtgtagagctctgcactggccaacaaagagcccactccatttgagggggtggggtgggcg 393

                                                                       
Query: 306 gtgcggatatcatctaaataactataaaaaaaaaaagcaaaacgaaggtgtttggatggg 365
           |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||
Sbjct: 392 gtgcggatatcatctaaataactatataaaaaaa--gcaaaacgaaggtgtttggatggg 335

                                                                       
Query: 366 ggaaagctacctcacttttgttctccaagttcacgggatgtctcacaaattcgccagcat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggaaagctacctcacttttgttctccaagttcacgggatgtctcacaaattcgccagcat 275

                                                                       
Query: 426 aaccaactccttgctgactgaggttggcctctgctgtttgtacaatctttcggggcacac 485
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 274 aaccaactccttgctgactgaggttggcctctgctgtttgtacgatctttcaggacacac 215

                    
Query: 486 tgtcccaca 494
           |||||||||
Sbjct: 214 tgtcccaca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 892
Length adjustment: 10
Effective length of query: 484
Effective length of database: 882
Effective search space:   426888
Effective search space used:   426888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)