BAC Information

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BAC

Clone NameMSMg01-423J07
Chromosome7 (Build37)
Map Location 3,155,739 - 3,156,169
singlet/doubletsinglet
Overlap geneAU018091
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1
Downstream geneLOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423J07.T7 (MSMg01no423_j07.b1)MSMg01-423J07.TJ (MSMg01no423_j07.g1)
ACCAG517703AG517704
length744739
length of high quality
(start - end)
500 (59 - 558)473 (64 - 536)
definitionCHROMAT_FILE: MSMg01no423_j07.b1 PHD_FILE: MSMg01no423_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:18 2005CHROMAT_FILE: MSMg01no423_j07.g1 PHD_FILE: MSMg01no423_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTTC
CCGATATAGTTAAATAAAGGCACTCATTTTCTTCCTTTCCTCATCTGTTT
ACAATGTTTTATAGTAGGATGATCAATCTTAAAATATCACATCATAGAAA
TGTCATGGTTTGTACTGGTAGCAATGTCTGCACAAAGTAAGAGTCTACAG
TTTAACCACTTGGCCTAGTACTAGACAGTTTTCCTCATAATCATATTTTC
CTGAAATCTTTAGCCATTGTCAGGAACAGCAGTGTTGGTCAGAAGTGTTA
ACTCTTCTGTTGAAGCTCCCAGTAGAGAAATGGTCTGTCCACTGAGGCTT
TCCCTGTTGGCAGGTCTTGTCTTTCAGGCCTCAGCTGATCAGAGACTGAC
CCATCCAGCAGGTCCAGTTATTTGAGGGTCTCGAGGGGACCTTCTCCTAA
GAACCAAATGGGGGGTAGAGAGAGACGAGAACCTTGTACAATGAATGACA
CACAGAAGCAGTCTGGTAATATCAAGGTCTCACTGTATTAGCCAGGCTCA
AGGTTTAAATGCACAAGCAAAAGGGGAAGTACTTCTCAGCAGGAGGAATT
GGGCACTGGAAATGCACCTTCACAGGAGGGACGGGGCCTCTAAAAAAGAG
AAGGACTTCTCCCCAGGAGGGAGGGGGCAGGGGAAATTTTTCTTTGGGGA
CAAATGGGGAAAAAGGAATTGTTGTATTTGGTACCCTTTTTTTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCAGTGGGAACCTGGGCAAAAGGGTGATCAATTGCA
CCTCACTGTCTATTCCCTTTTAGGATTTGCTATCTACTTTGGATATGGGA
TACAGCACAGCTTGGAAGAGAAGAATGACCAACAGCCAACAGCCTCAAGC
TCCCAGACTCTCCAGGAACTCCAGGAACATACTCCCAGTGTTGACTTACC
TTAACTGGAGAAACGGGATGCTTCCAGGACCCCATGGGCATCAGTTTCCT
TCCCTTCCCTTCCCTTCCCTTCCCTTTCCCTTTCCTCCCTCTTTCCCTTC
CCCCTTTTCCTTTCCTCCCTCTTTCCCTTCCTTTTATTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGTGTGTGTGTGTGT
GTGTGGGGCGGNTTGGGAAGGCAGTACTGGGAATTGAACTTAGAGTCTTG
TGCGTCTGAGGCAAATGCTCCATCACTGACCTAATCTCTTGTAGGTATCT
TTAGGTCAAGGAAAAGTTTGAATATTTGTGGGCTGTAGATGGGACTTCTT
TTCTTACTTTTTTTTTTCTTCTCCTCCTTTTGGGACTTATATTATTGTAA
TTTTGTGAGCAAATTCCTTAACTTTTTTTTTTTTTTTTTTTTTTTTTTGG
CGGGGGGAGTGAAAATTGAACCCCCGATCTTGTTATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_j07.g1 MSMg01no423_j07.g1 CHROMAT_FILE:
MSMg01no423_j07.g1 PHD_FILE: MSMg01no423_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:18 2005
         (473 letters)



>mm_chr7_3155739_3156611
          Length = 873

 Score =  781 bits (404), Expect = 0.0
 Identities = 427/441 (96%), Gaps = 10/441 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagtgggaacctgggcaaaagggtgatcaattgcacctcactgtctattcccttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cccagtgggaacctgggcaaaagggtgatcaattgcacctcactgtctattcccttttag 372

                                                                       
Query: 61  gatttgctatctactttggatatgggatacagcacagcttggaagagaagaatgaccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gatttgctatctactttggatatgggatacagcacagcttggaagagaagaatgaccaac 312

                                                                       
Query: 121 agccaacagcctcaagctcccagactctccaggaactccaggaacatactcccagtgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agccaacagcctcaagctcccagactctccaggaactccaggaacatactcccagtgttg 252

                                                                       
Query: 181 acttaccttaactggagaaacgggatgcttccaggaccccatgggcatcagtttccttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acttaccttaactggagaaacgggatgcttccaggaccccatgggcatcagtttccttcc 192

                                                                       
Query: 241 cttcccttcccttcccttccctttccctttcctccctctttcccttcccccttttccttt 300
           |||||||||||||          |||||||||||||||||||||||||||||||||||||
Sbjct: 191 cttcccttccctt----------tccctttcctccctctttcccttcccccttttccttt 142

                                                                       
Query: 301 cctccctctttcccttccttttattctctctctctctctctctctctctctctctctctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cctccctctttcccttccttttattctctctctctctctctctctctctctctctctctc 82

                                                                       
Query: 361 tctctctctctgggtgtgtgtgtgtgtgtgtggggcggnttgggaaggcagtactgggaa 420
           |||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 81  tctctctctctctctgtgtgtgtgtgtgtgtggggcgggttgggaaggcagtactgggaa 22

                                
Query: 421 ttgaacttagagtcttgtgcg 441
           |||||||||||||||||||||
Sbjct: 21  ttgaacttagagtcttgtgcg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)