BAC Information

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BAC

Clone NameMSMg01-424E02
Chromosome7 (Build37)
Map Location 150,391,073 - 150,391,603
singlet/doubletsinglet
Overlap geneKcnq1
Upstream geneEG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5
Downstream geneCdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424E02.T7 (MSMg01no424_e02.b1)MSMg01-424E02.TJ (MSMg01no424_e02.g1)
ACCAG518219AG518220
length730807
length of high quality
(start - end)
604 (46 - 649)275 (84 - 358)
definitionCHROMAT_FILE: MSMg01no424_e02.b1 PHD_FILE: MSMg01no424_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:10 2005CHROMAT_FILE: MSMg01no424_e02.g1 PHD_FILE: MSMg01no424_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTCTATGACCATTTTAACATGGTTTTGGGGAAATGATAAAAGT
TCATGGTTGAACTGAATATCCAGTTTTTCCATCTTGTCTCCTCCCCACAG
AACAAAACAAAACCTAGCATAACCTTTACATGTGGATTAGAAAGCACCTA
TCAATAAATTTGAATGTCCACCTGATCCCCAGTTTCCCCCACTATCTGTT
TGGTTTTTATGCTGACATTATACATCTGGTGTTCATCCTCAAACCTTGTT
CATGTTCAAAGTTGCTTTGGTATTCTAGACTATCTGCATGCTAGTCTTTG
ACTGGCTTTATACTGAATTTAGAAATCAATATTGAACCTTGTAATTTGTG
AACCTAATTATATATCTATATTTATTTTTTTGAAGTTTCATCAGCATAGT
TATATAGGCTCCAAAGGAGAGCTCTTTTGTCAAATAGATTTCTATGTTTC
ACATGTTTAGTGCTACTCAGAATAGTATTTAAAAGTTTCCAATTCTGCCT
TACTTGTAGCTAGAATTTAGAAGTAGAATTGCTTTTTGCAGAGCTACTTT
GTATATGCAACTGAATCCATATATTCTGGTGGCCAATCTGACACATCAGA
TTTTCTATACAGACAACCAGGAGATCTACAAATAATGCCAGTTTCATTTC
TTTTCCACTTTGCGGNTTCTTACCTTATTC
TCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACAGGAACCTGGAG
GCAGAGACTCAAACAGAAACCACATAGGCACACTGCTGACTAGTTGGTAC
CTCATGGTTTGCACAGCCTCCTTCCTTATACAGCCCAGAGGGAGCTCCAC
CCACAGGAGGCTGAGCCCTCCCCGACTCATCACTAATCAAGAAAATGCCC
TCACAGACTTGCCTACAGAACAATCTGATGCAAGCAACTCCTCGGCTGAA
ATTCCTTCCCTCTTCCCAAATATGTCTAGGTTTGTATAAAGTTGATAAAA
ATTATCAAACACTCAGAACAAGGTGGTGTGTGCTTGCGTGTGCGTGTGTG
TGCGCGTGTGTTTTATATCAAAGTTTTATAAAAACTTCCCCTCTCCCACG
TTTACTCATTTCTCTCCCTTTCTCTTCTTTTTCTCCCTTTTTTTTCCTTA
CTTTTACCCCCCTTTTCATTTCATCTCCCTCTTCTTTCCCCCTTTTCCCC
CTTCTTATCATCCTCTTGTTCTTGCATCTCCTTTCTGTTCTCGTCGTCCT
TTTATTTCCATCTCTTCTTTTTCTTCCATTTTTCTTTTTTCCTTTTAATA
TATTTCTTTTTTCTTTCTTTCACTTTCTTTATCCCCCTCATGTGTTTTTT
TTCTCCAGCCCCGATCCGTTCCTCTCTCCTTTTCCTTCCTCCCCCCTTCA
TTTTTTCTTCGTCCTGTCCTTACCAGCTGGCTCCGGTCCTGGTTTCTTTC
CCCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_e02.b1 MSMg01no424_e02.b1 CHROMAT_FILE:
MSMg01no424_e02.b1 PHD_FILE: MSMg01no424_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:10 2005
         (604 letters)



>mm_chr7_150391073_150392076
          Length = 1004

 Score = 1004 bits (519), Expect = 0.0
 Identities = 528/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttctatgaccattttaacatggttttggggaaatgataaaagttcatggttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaattcagttctatgaccattttaacatggttttggggaaatgataaaagttcatggttg 472

                                                                       
Query: 65  aactgaatatccagtttttccatcttgtctcctccccacagaacaaaacaaaacctagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aactgaatatccagtttttccatcttgtctcctccccacagaacaaaacaaaacctagca 412

                                                                       
Query: 125 taacctttacatgtggattagaaagcacctatcaataaatttgaatgtccacctgatccc 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 411 taacctttacatgtggattagaaagcacctgtcaataaatttgaatgtccacctgatccc 352

                                                                       
Query: 185 cagtttcccccactatctgtttggtttttatgctgacattatacatctggtgttcatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cagtttcccccactatctgtttggtttttatgctgacattatacatctggtgttcatcct 292

                                                                       
Query: 245 caaaccttgttcatgttcaaagttgctttggtattctagactatctgcatgctagtcttt 304
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 291 caaaccttgttcatgttcaaagttgctttggtattctaggttatctgcatgctagtcttt 232

                                                                       
Query: 305 gactggctttatactgaatttagaaatcaatattgaaccttgtaatttgtgaacctaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gactggctttatactgaatttagaaatcaatattgaaccttgtaatttgtgaacctaatt 172

                                                                       
Query: 365 atatatctatatttatttttttgaagtttcatcagcatagttatataggctccaaaggag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atatatctatatttatttttttgaagtttcatcagcatagttatataggctccaaaggag 112

                                                                       
Query: 425 agctcttttgtcaaatagatttctatgtttcacatgtttagtgctactcagaatagtatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 agctcttttgtcaaatagatttctatgtttcacatgtttagtgctactcagaatagtatt 52

                                                              
Query: 485 taaaagtttccaattctgccttacttgtagctagaatttagaagtagaatt 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  taaaagtttccaattctgccttacttgtagctagaatttagaagtagaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)