BAC Information

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BAC

Clone NameMSMg01-424I05
Chromosome7 (Build37)
Map Location 130,626,891 - 130,773,385
singlet/doubletdoublet
Overlap geneZkscan2, LOC100043482
Upstream genePrkcb1, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I05.T7 (MSMg01no424_i05.b1)MSMg01-424I05.TJ (MSMg01no424_i05.g1)
ACCAG518415AG518416
length743762
length of high quality
(start - end)
561 (48 - 608)322 (81 - 402)
definitionCHROMAT_FILE: MSMg01no424_i05.b1 PHD_FILE: MSMg01no424_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:29 2005CHROMAT_FILE: MSMg01no424_i05.g1 PHD_FILE: MSMg01no424_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,626,891 - 130,627,447)(130,773,067 - 130,773,385)
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAGTTGACGAATCTTGAATGGCTGAGAAGCACTTAAAGTAAT
GTTCAAAGTTCTTAGTGATCAGGGAAATGAAAATCAAAATGACCCTGAGA
TTCCACCTTACACCAATCAGAATGGCTAAGATAAAAAATTCAGGTGACAG
CACATGTTGGTGAGTATGCAGGAAAAGAGGTTTTCGCATTGGATCCAACA
TTGTTTTGGGATTCAGAGGAAGTCACAGCCTATTAAGTTGATCTGACAAT
AACTGATAATTTGATTACGTTCTGGAGGTAACCTAAAAATATTCACAGGG
ACTCTTTTTATAGTTATTAAAAGGAAGCTGGGATCAGAAAGATGGCTCAC
TAGTTAAAGAATGGGTTGCTTTTTCAGAGTACTTGGGTTTATGGCTTTCA
ACTATCTGTAACTCCAGTTCCAGGGAACTAAAATCCTCTTCTAGCCTCCG
TGGGCCCCAGACATAGACACCTTACCCAGACATACATGAAGGCAAAATGC
CCACAGATGCATAGAGCCAAATTTGTTCAAGGTGTGGAATTTGGCAGGCA
TCATGAGCCATGCCTTACATATGAGAGAACTTAAGGTGCATGTAGAACAC
AGCAAGGAGTTTTATTTCCAAGTAGCCTAGAGAAAGAAAACAGTAGCATA
CCGGCCTTTGAGGATACGATGACCATAGAGTAAGCACCGCTTN
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAACAAGCAGCTCTAC
TTCTTTGCAGCCTTGCATCATGATGCTGTGATGGCCTGCCACACTAACAG
CAGCAAGAACGGACCCAGCTGCCATGAACAGAAAGCTCCGAAACTCTGAG
CCAAATTAAACATTTTCTCTTTCTAAATAATTTGTCTCAAGTATTTGTCA
CAGTGAGAAAACATGAATAAGTGGCCATCTGCTGGAACTAATAAACAGAA
ATCATGATTGTGTACCCCCCAGAGCCCTCTCCATCCCTGGACTCAGATCG
TTAACTAGCTACTGAACACCAACGTGCAGAGTAACTGACTGAAGGCTCAT
ACTTGGGAGCCTTAGCCTCAGTCTGCCACTTACTAATGGTGGTCTTTGGA
CCAATCATTCCATTCCCACATCTCAGTTTTCGTGAGTAATAAATTAGCCA
TTGTGTTTGCATACTGATCCGATGAGATAGAGGCACACATCATGAGCCAC
ATAAATTCTGTCTGCTGCCCTTCTTATCCTGACTAATAAGGATCCCTTTT
GTTTCTCGACTCTCACTGTTACCCCTCTGATCTTCGCCTGCCCTCGACTT
TCCTTTGCCACCTGCTTCTTGCCCTTTCCTCCCATTTCCCCTACCTTCAC
TTTTCCCTTCTTCCCCTTCTTACCTTTCTTTTTCCTCTCTCCTCCACCTT
CCCCTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i05.b1 MSMg01no424_i05.b1 CHROMAT_FILE:
MSMg01no424_i05.b1 PHD_FILE: MSMg01no424_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:29 2005
         (561 letters)



>mm_chr7_130626687_130627647
          Length = 961

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagttgacgaatcttgaatggctgagaagcacttaaagtaatgttcaaagttc 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagcagacgaatcttgaatggctgagaagcacttaaagtaatgttcaaagttc 264

                                                                       
Query: 65  ttagtgatcagggaaatgaaaatcaaaatgaccctgagattccaccttacaccaatcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagtgatcagggaaatgaaaatcaaaatgaccctgagattccaccttacaccaatcaga 324

                                                                       
Query: 125 atggctaagataaaaaattcaggtgacagcacatgttggtgagtatgcaggaaaagaggt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 atggctaagataaaaaattcaggtgacagcacatgttggtgaggatgcaggaaaagaggt 384

                                                                       
Query: 185 tttcgcattggatccaacattgttttgggattcagaggaagtcacagcctattaagttga 244
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 385 tttcgcattggatccaacattgttctgggattcagaggaagtcatagcctattaagttga 444

                                                                       
Query: 245 tctgacaataactgataatttgattacgttctggaggtaacctaaaaatattcacaggga 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 445 tctgacaataactgataatttgattacgttctggaggtaacctaaacatattcaccggga 504

                                                                       
Query: 305 ctctttttatagttattaaaaggaagctgggatcagaaagatggctcactagttaaagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctttttatagttattaaaaggaagctgggatcagaaagatggctcactagttaaagaa 564

                                                                       
Query: 365 tgggttgctttttcagagtacttgggtttatggctttcaactatctgtaactccagttcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggttgctttttcagagtacttgggtttatggctttcaactatctgtaactccagttcc 624

                                                                       
Query: 425 agggaactaaaatcctcttctagcctccgtgggccccagacatagacaccttacccagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agggaactaaaatcctcttctagcctccgtgggccccagacatagacaccttacccagac 684

                                                                       
Query: 485 atacatgaaggcaaaatgcccacagatgcatagagccaaatttgttcaaggtgtggaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atacatgaaggcaaaatgcccacagatgcatagagccaaatttgttcaaggtgtggaatt 744

                            
Query: 545 tggcaggcatcatgagc 561
           |||||||||||||||||
Sbjct: 745 tggcaggcatcatgagc 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no424_i05.g1 MSMg01no424_i05.g1 CHROMAT_FILE:
MSMg01no424_i05.g1 PHD_FILE: MSMg01no424_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:29 2005
         (322 letters)



>mm_chr7_130772867_130773588
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaacaagcagctctacttctttgcagccttgcatcatgatgctgtgatggcctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cacagaacaagcagctctacttctttgcagccttgcatcatgatgctgtgatggcctgcc 460

                                                                       
Query: 61  acactaacagcagcaagaacggacccagctgccatgaacagaaagctccgaaactctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acactaacagcagcaagaacggacccagctgccatgaacagaaagctccgaaactctgag 400

                                                                       
Query: 121 ccaaattaaacattttctctttctaaataatttgtctcaagtatttgtcacagtgagaaa 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccaaattaaacatttcctctttctaaataatttgtctcaagtatttgtcacagtgagaaa 340

                                                                       
Query: 181 acatgaataagtggccatctgctggaactaataaacagaaatcatgattgtgtacccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acatgaataagtggccatctgctggaactaataaacagaaatcatgattgtgtacccccc 280

                                                                       
Query: 241 agagccctctccatccctggactcagatcgttaactagctactgaacaccaacgtgcaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 279 agagccctctccatccctggactcagatcgttaactagctactgaacaccaacgtgtaga 220

                              
Query: 301 gtaactgactgaaggctca 319
           ||||||||||||| |||||
Sbjct: 219 gtaactgactgaacgctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)