BAC Information

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BAC

Clone NameMSMg01-424I24
Chromosome7 (Build37)
Map Location 49,381,804 - 49,382,135
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556
Downstream geneEG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I24.T7 (MSMg01no424_i24.b1)MSMg01-424I24.TJ (MSMg01no424_i24.g1)
ACCAG518453AG518454
length739745
length of high quality
(start - end)
570 (65 - 634)432 (77 - 508)
definitionCHROMAT_FILE: MSMg01no424_i24.b1 PHD_FILE: MSMg01no424_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:33 2005CHROMAT_FILE: MSMg01no424_i24.g1 PHD_FILE: MSMg01no424_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATTTTACATTAGTAGTACTCCATTGTGTAAGTGTACCACATTTTCT
GTATCCACTCCTCTGTTGAGGGACATCTGGGGTCTTTCCCACTTCTGGCT
ATTATAAAAAGAGGTTGCTATGAACATAGTGGACCACGTGACCTTATTAC
ATGTGGGATCATCTCCTGGGTATATGCCCAGTAGTAATATTGCTGGGTCC
TTGGGTAGTATTATTTCTAGTATTCTGAGGAACCACCAAACTGATTTCCA
GAGTGGTGTTATCATCTTGCAATCCTACCAGCAGTGGAGGAGTGTCCTTT
TTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTCT
CCCTTTGACTGGTGAGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTT
CCCAGATGACTAAGGATGTTGAACAGGTTTTTAGGTCCTTCTCAGGCATT
CGGTATTCCCCAGTTGAGAATTTTTTGTTTAGCTCCGTACACCATTTTTA
AAATAGGATTATTTGGTTTTCTGTAGTCTAACTTCTTGAGTTCTTTGTAT
ATATTGAATGTTAACCCTCTATCAGATGCTGGATTGGTAAAGATCTTTTT
CCAATCACTTGATTGCCTATTTGGATTATTGACAGTGTCTTTTGCCTTAC
ACAAGCTTTGCCATGTTATGAGGTCCCCTTTGTTCTAAT
CCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCCCAAAATTCCTAAGAGTCAAAACAGTGAAGA
AATTAACAATCAAATATAGTAACTATCAAATCTCAACAGTAACTTGACTC
ACAGTGACATTTCATGCCTATATCCTCCATTGTGATATTTTGTCTTGTTT
GACCACATATGGTCTTCTATGTGCTTTCATAATGATCATGGGCTCAAATG
TGCAACTCTTGTGGACTGAAAATAATGTTTCCTTTTAGTCATCTACAAGT
TCTGATCTTTAATCTTCACACTTCTTTTTTGCCATGATTGCTCAGTCTTT
TAGGGAGGGGTATGATATCTAACTGATTTATGGATTAGCACCTTATATTC
TATTATTATATGTACCATGATCAGTCAGAGATTTATGTATTATTTGCGAT
TTACTATAAAAAGAATTTATGAGGAGGGCTGATGGATGCACTAATTTACA
TCAATAAGTCATTAGTGGTTGATTTTGTACTTTAACATAATAAGAGTATT
AAATTATCCTTGTGTATCTACAACTTAAACTTATCACAGAGTTCTTGCCA
CTTTTATAGCGCAATGCATGTTTTCTTTTTTTTTAATTAGGTATTTTCCT
CATTTACATTTCCAATGCTGTCCCAAAAATCCCCATACCTTCCCCACCCC
CACCCCCTTATACAACCACTCCACTTTTTGGCCCTGGCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i24.g1 MSMg01no424_i24.g1 CHROMAT_FILE:
MSMg01no424_i24.g1 PHD_FILE: MSMg01no424_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:33 2005
         (432 letters)



>mm_chr7_49381525_49382356
          Length = 832

 Score =  298 bits (154), Expect = 5e-85
 Identities = 295/350 (84%), Gaps = 27/350 (7%)
 Strand = Plus / Plus

                                                                       
Query: 80  gacatttcatgcctatatcctccattgtgatattttgtcttgtttgaccacatatggtct 139
           ||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| |||||||
Sbjct: 280 gacatttcatgcctacatcctccatggtgatattttctcttgtctgagcacacatggtct 339

                                                                       
Query: 140 tctatgtgctttcataatgat-catgggctcaaatgtgcaactcttgtggactgaaaata 198
           || ||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 340 tcaatgtgctatcataatgatgc-tgggttcaaatgtgcaactcttgtggactgaaaata 398

                                                                       
Query: 199 atgtttccttttagtcatctacaag-ttctgatcttta--atcttcacacttcttttttg 255
            | ||||||| | || ||| ||||| || || ||||||  |||||| |||||||||| ||
Sbjct: 399 ttctttccttgtggttatccacaagctt-tggtctttacaatcttcccacttcttttctg 457

                                                                       
Query: 256 ccatgattgctcagtctt-ttagggaggggtatgatatctaactgatttatggattagca 314
           |||||||| ||||| ||| || |||||| ||||||||||||||  |||||||||||||||
Sbjct: 458 ccatgattactcagccttgtt-gggaggagtatgatatctaacccatttatggattagca 516

                                                                       
Query: 315 cctta--tattctattattatatgtaccatgatcagtcagagatttatgtattatttg-c 371
             |||  |||||||||||||| |||| ||| |          |||||| ||||||||  |
Sbjct: 517 --ttacatattctattattatgtgtaacat-a----------atttatatattatttatc 563

                                                             
Query: 372 gatttactataaaaaga-atttatgaggagggctgatggatgcactaatt 420
            |||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 564 -atttactataaaaa-atatttatgaggagggttgatggatgcactaatt 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)