BAC Information

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BAC

Clone NameMSMg01-424P03
Chromosome7 (Build37)
Map Location 34,473,849 - 34,474,156
singlet/doubletsinglet
Overlap genenone
Upstream geneEG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1
Downstream geneLOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424P03.T7 (MSMg01no424_p03.b1)MSMg01-424P03.TJ (MSMg01no424_p03.g1)
ACCAG518745AG518746
length760749
length of high quality
(start - end)
529 (44 - 572)555 (83 - 637)
definitionCHROMAT_FILE: MSMg01no424_p03.b1 PHD_FILE: MSMg01no424_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:01 2005CHROMAT_FILE: MSMg01no424_p03.g1 PHD_FILE: MSMg01no424_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTACCTCTGAGCCTCATTTTTTCATGGGGTTATTGGTATGGG
TTTCTGTCCACATCCTCTGTTCTATCTCAGTGCCCTATATGACTGTTTCT
AAGGTAGTACTGAAGTGTTCTTGTCACTATGGATCTGTGGCATAATTTGA
GATCAGGAATAGTGATACCTCCAGACATATCACTAGTTCTCAAAACTTCA
TTGCCATTTATGTTTCCATTTGAATTTTTAGGGTGTCTTTTTTAAAATTT
CTGTCCAATACTCTGTAGCAGTCCTTCTGCCTCATAAGTCAGCTGTTTTA
TGTTGTCCCCAAGTTGACACCAGGTCGGCTCTCCTTGCTGTAGCCCATGG
CGGAGATAGGAAGAGTTTCTTATTTTGCTTGTGTCTGCTCTCTCTGATTT
CTCCTTCTCTGTGCGCTCAATACAGCTTTCTTGTCACCACTGTCAGAGCA
CTATCAGTTCTTACTCACAAGTCAGCCTGTCACATTGGAAGCTAACATGC
TCTTGCAGCATTCTGTGGAAAAAAAACAGAAACATTGCCCCCTTTCCTTC
ATATTAAGGATCTGAACAGGATCATGCCATGTGCCAATAAGTGGATCCCT
TCCTCTCATGAGTATGTCTTAAACACTCCGAGAAGATTTTTGGCTCCCAA
TTTTAATTGTTTTCGAGAAAAAAAAGTCCCCAGTACGGTTTTCTTGAAAA
TATAAAAAAC
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGATCTGAAGATGT
TACTCCTAGGAGCTGATCTCCCTTCAGGTCATCAGTACAGACAACATGTT
TTCAAGAAGGCAGCAGTCAGTGAAGTCAGTGAAGTCAGGCCAGTCAGTGA
AGCACTTGCTGGGTACATGCTTGAGTCTATGATTTTCAGACCTCAGAAGC
TGTGAGGATGGCCAAGCACAAAGTGCCCCCTGGTAACACCAGCACCAGAG
AGCCCACCCAGGGCTCACTGGCCATCCCATCTAGCAAAATTAGCAAGCTC
CAGTAAGAGACCTTGTCTCAAAAAAATAAGGTGGTGTAAGCTGTAAAAAG
GACTCAGAATTGTTTCCACCAAACACATGGCATCTAACAACGAACTATAA
CTTCAATTCTAGAGGGTCTAGCGCTCTCCTGTGACTTCCACAGACACTGC
AAACATGACTGCCAAGACACTCACTCAGGCACAATCCCCATACATGTAAA
GTTAAACTAAATAAAATGACAAATGAGTACATACATATGCATATATATGT
ATGTATAAACACACATATAATGTATACACACACACACACACACACACACA
CACACTCTCATATATATGGTGGAGCATAACTTAAAGGTCTCTCTGCTTGT
CACTGAAAACCTTATGATACTTACACATTTGCATGCCTCTTAGTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_p03.g1 MSMg01no424_p03.g1 CHROMAT_FILE:
MSMg01no424_p03.g1 PHD_FILE: MSMg01no424_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:01 2005
         (555 letters)



>mm_chr7_34473849_34474803
          Length = 955

 Score =  561 bits (290), Expect = e-164
 Identities = 302/308 (98%), Gaps = 4/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggatctgaagatgttactcctaggagctgatctcccttcaggtcatcagtacagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 308 cagaggatctgaagatgttactcctaggagctgatctcccttcaggtcatcagtacagat 249

                                                                       
Query: 61  aacatgttttcaagaaggcagcagtcagtgaagtcagtgaagtcaggccagtcagtgaag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 248 aacatgttttcaagaaggcagcagtcagtaaagtcagtgaagtcaggccagtcagtgaag 189

                                                                       
Query: 121 cacttgctgggtacatgcttgagtctatgattttcagacctcagaagctgtgaggatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cacttgctgggtacatgcttgagtctatgattttcagacctcagaagctgtgaggatggc 129

                                                                       
Query: 181 caagcacaaagtgccccctggtaacaccagcaccagagagcccacccagggctcactggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 caagcacaaagtgccccctggtaacaccagcaccagagagcccacccagggctcactggc 69

                                                                       
Query: 241 catcccatctagcaaaattagcaagctccagtaagagaccttgtctc----aaaaaaata 296
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 68  catcccatctagcaaaattagcaagctccagtaagagaccttgtctcaaaaaaaaaaata 9

                   
Query: 297 aggtggtg 304
           ||||||||
Sbjct: 8   aggtggtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)