BAC Information

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BAC

Clone NameMSMg01-427E10
Chromosome7 (Build37)
Map Location 65,609,516 - 65,610,018
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427E10.T7 (MSMg01no427_e10.b1)MSMg01-427E10.TJ (MSMg01no427_e10.g1)
ACCAG520516AG520517
length748739
length of high quality
(start - end)
472 (49 - 520)503 (77 - 579)
definitionCHROMAT_FILE: MSMg01no427_e10.b1 PHD_FILE: MSMg01no427_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:06 2005CHROMAT_FILE: MSMg01no427_e10.g1 PHD_FILE: MSMg01no427_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCC
GCGGAATTCTTTGTTCTTCTCTGAGCCCCATTTTTTAATGGGGTTGTTTG
ATTTTCTGGAGTCCACCCTCTTCAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TATTTTTGTCTTATTGACAGTATCTTTTGCCTTGCAGAAGCTTTGCAGTT
TCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCGATTCAGGATTTTTTCCCCTATGTTTTTATCTTTGAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATT
CACATTCTTCAACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTATTAGCTCCCTTGTCACAGACCA
AGTGGCCATAGGTGTGTGTGTTCATTTCTTGGTCTTCAATTCTATTCCAT
TGGTCTAGATGGCTGTCACTATACCAGTACCATTGCTGTTTTAACACATA
TGCTCCTGTACAAAGCTTTTTTTCTTTTTTGTGTGTTTCCACCTGTAGGT
CCTTATTTCCTTGTAAAAAGTTTTTTGCTTATCCTAAGTTTTTTTGTA
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTTGTGTCCCACAAATGTGA
TCTAGATTCCCATGTGTTTCTCCCTCAGTTCTTATGGCAAAGTAAGTGCT
TAAAGTTCAATTGTTCATAATATTTAACAATCTTAATTTCACAGCTGTAC
ATGTTCTGAAAATTAGTGTCATTAAGGAAAAGACTATTGCCCTGAAACAA
AGGGAAGATACCCTTTGGGAAAGATTCAACAAAGAATGATTCCAACTTGT
GAAAGTGAATAGAAGGCCTTTTCTGATCCTGGAAATAAACTTAATAGAAG
CTCTGCTGCTAACATAATTCAAGAGGTAAAGATTTATCCCAAGCCAGCAG
CAGAACATGGCAGAGCCATCCACATGATATTGGGCTTTTAGATGCATGAA
AGACATAATGGTGAAGGGATCACAGATTCTTCATCTATGGTTTCAGAGAG
CCACTGAAGCAAGACTGCATATGGCAGGGTAGTTGCTTCATGCAGGTCCT
GCAAGGACAAGAGACTGTGAAAGATCATAGTATGAAGATGAAAGAGTAAA
GCTTGTACTTCAGTGGAAATGCATAACATTGGAGATGGCTGCAAAATGAC
ACACTGTGCCAAGGAAAGTACTTGCCAAGAGTAGAAACCACGGCAAAAAA
GATGACCTTTTCTAACGCATAATCTTGATAGTAAGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_e10.g1 MSMg01no427_e10.g1 CHROMAT_FILE:
MSMg01no427_e10.g1 PHD_FILE: MSMg01no427_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:06 2005
         (503 letters)



>mm_chr7_65609316_65610218
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccttgtgtcccacaaatgtgatctagattcccatgtgtttctccctcagttcttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccttgtgtcccacaaatgtgatctagattcccatgtgtttctccctcagttcttatg 260

                                                                       
Query: 61  gcaaagtaagtgcttaaagttcaattgttcataatatttaacaatcttaatttcacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaagtaagtgcttaaagttcaattgttcataatatttaacaatcttaatttcacagct 320

                                                                       
Query: 121 gtacatgttctgaaaattagtgtcattaaggaaaagactattgccctgaaacaaagggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gtacatgttctgaaaattagtgtcattaaggaaaagactattgccctggaacaaagggaa 380

                                                                       
Query: 181 gataccctttgggaaagattcaacaaagaatgattccaacttgtgaaagtgaatagaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataccctttgggaaagattcaacaaagaatgattccaacttgtgaaagtgaatagaagg 440

                                                                       
Query: 241 ccttttctgatcctggaaataaacttaatagaagctctgctgctaacataattcaagagg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttttctgattctggaaataaacttaatagaagctctgctgctaacataattcaagagg 500

                                                                       
Query: 301 taaagatttatcccaagccagcagcagaacatggcagagccatccacatgatattgggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagatttatcccaagccagcagcagaacatggcagagccatccacatgatattgggct 560

                                                                       
Query: 361 tttagatgcatgaaagacataatggtgaagggatcacagattcttcatctatggtttcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagatgcatgaaagacataatggtgaagggatcacagattcttcatctatggtttcag 620

                                                                       
Query: 421 agagccactgaagcaagactgcatatggcagggtagttgcttcatgcaggtcctgcaagg 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 agagccactgaagcaagactgcatatggcagggtagtcgcttcatgcaggtcctgcaagg 680

                                  
Query: 481 acaagagactgtgaaagatcata 503
           |||||||||||||||||||||||
Sbjct: 681 acaagagactgtgaaagatcata 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)