BAC Information

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BAC

Clone NameMSMg01-427K01
Chromosome7 (Build37)
Map Location 4,018,085 - 4,018,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427K01.T7 (MSMg01no427_k01.b1)MSMg01-427K01.TJ (MSMg01no427_k01.g1)
ACCAG520782AG520783
length773749
length of high quality
(start - end)		273 (55 - 327)511 (82 - 592)
definitionCHROMAT_FILE: MSMg01no427_k01.b1 PHD_FILE: MSMg01no427_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:33 2005CHROMAT_FILE: MSMg01no427_k01.g1 PHD_FILE: MSMg01no427_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTGTTTTTCCATGTACCCCATTTTTAATTGGGTCA
TTTGAGTAGTTCATGTCTAAATTCTTGAGTTCTTTGTAAATTTTGGATAT
TGGGCCTCTGTCAGATGTAGTATTGGTGAAGATCCTTTCCCAATTTGGGG
GCGGCTGATTTGTCCTATTAACAGTGTTGTTTGCCTTACAAAACTTTGCA
GTTTCATGAGGTCACATTTATCAATTACTACTTTGACTCTTTAAAGACAC
TGGCGCCAGCCCCAGACCATCATTGCCATTTTTGCTCTTGGATAAGGACA
CAGAGCTAATATTTCCTTTGTCTTTGCACCTGAGCCTGTGAGAAAAACCT
TGGATAGGTATGGATCCCAACAACTGGATGTGGGCTTCGAAAGTTTAAAG
ACTTGAGCCATTTTCGCTTATAGCTTGTGTGTGTCGGTGTGTGTGTGCGT
GTGTGTTTGCCCTTTACACTCGTTCCCCTACGCTCCTCCTTTTTTAGTTC
TCTTCTCTTTTTTTTTTTTTTTTTCGTTTCTTTTCTTCTTTTTTTTTTCC
TCTCTTTCTTTTCTTTTTCTCTTTCCTCTCCTTTCTTTCGTTATGCACTT
TCTTACTTTCGATACATCCCTCTCCTTTTTTTTTTTTTCTTTTTCTTTTT
TTTTCTCTTTTCTCTTCCTCCCCACCCTCTTTTCTATCTTCTTAACTTTT
ACTCCCCTCTCTCTTTCCTCCCT

NNNGGCGATGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATCCTCTTGCCTTTAC
CTCCTAAGTTCTGGAACAGCAGGTGTGTTCCACCACACTGTGTTGTGTTT
ATTTATTTATTTATTTATTTACCCACTGAATCCAATTAATGCTTTCCAAA
TATCCATGGATATAAAGTCAACACGGGTCACACCCTTAAAGATGCATTTA
TATTAATGGGAATAGACAGTTTTGCAGTCTGTCTGTTCACCACTTTAGCA
TGAGTTATGGCTTGGAGAGTTACTGGCTCCTTTATCTTGTCAAGTCACAC
TTGTAAGAGCATTGGAGTTTCACCTGCAAAGACAATCTGATTTGTGGCTG
TACTGAGGATGCTTATATATGATTCAGAACGACAGGAGAATCACCAGAAA
AAAATCTAATTTCCCTTCCTGACTGTTCCTGAAGTTTGGACTCTGAGGCA
AGCATTGGCTTATTAAAGAGCTACTGTTCCCTTCTCTGTTAACAGAAGAA
GAACTTGCAACTGAGGAGTTGGAGGGGTGTGCACACCTGTGTTCCAGAAC
TGCCAACACCAATAAGGCATCTTCTACGGGAGGTAATATTGAGTCACATG
GTCATATGTGTCTCTGTATTTGATATGACTGATGACTTAAATGTGCCCTG
TGAGAACCATCTTCCTCTAATCTAGGGAGCTCAAAAGCCCTATGAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_k01.g1 MSMg01no427_k01.g1 CHROMAT_FILE:
MSMg01no427_k01.g1 PHD_FILE: MSMg01no427_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:33 2005
         (511 letters)



>mm_chr7_4017885_4018795
          Length = 911

 Score =  973 bits (503), Expect = 0.0
 Identities = 509/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatcctcttgcctttacctcctaagttctggaacagcaggtgtgttccaccacactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatcctcttgcctttacctcctaagttctggaacagcaggtgtgttccaccacactgt 260

                                                                       
Query: 61  gttgtgtttatttatttatttatttatttacccactgaatccaattaatgctttccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtgtttatttatttatttatttatttacccactgaatccaattaatgctttccaaat 320

                                                                       
Query: 121 atccatggatataaagtcaacacgggtcacacccttaaagatgcatttatattaatggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccatggatataaagtcaacacgggtcacacccttaaagatgcatttatattaatggga 380

                                                                       
Query: 181 atagacagttttgcagtctgtctgttcaccactttagcatgagttatggcttggagagtt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagacagttttacagtctgtctgttcaccactttagcatgagttatggcttggagagtt 440

                                                                       
Query: 241 actggctcctttatcttgtcaagtcacacttgtaagagcattggagtttcacctgcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggctcctttatcttgtcaagtcacacttgtaagagcattggagtttcacctgcaaag 500

                                                                       
Query: 301 acaatctgatttgtggctgtactgaggatgcttatatatgattcagaacgacaggagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatctgatttgtggctgtactgaggatgcttatatatgattcagaacgacaggagaat 560

                                                                       
Query: 361 caccagaaaaaaatctaatttcccttcctgactgttcctgaagtttggactctgaggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 caccagaaaaaaatctaatttcccttcctgactgttcctgaagtttggattctgaggcaa 620

                                                                       
Query: 421 gcattggcttattaaagagctactgttcccttctctgttaacagaagaagaacttgcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcattggcttattaaagagctactgttcccttctctgttaacagaagaagaacttgcaac 680

                                          
Query: 481 tgaggagttggaggggtgtgcacacctgtgt 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 tgaggagttggaggggtgtgcacacctgtgt 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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