BAC Information

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BAC

Clone NameMSMg01-427M03
Chromosome7 (Build37)
Map Location 118,796,120 - 118,796,501
singlet/doubletsinglet
Overlap geneGalntl4
Upstream geneB430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
Downstream geneLOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427M03.T7 (MSMg01no427_m03.b1)MSMg01-427M03.TJ (MSMg01no427_m03.g1)
ACCAG520881AG520882
length7471,927
length of high quality
(start - end)
577 (77 - 653)---
definitionCHROMAT_FILE: MSMg01no427_m03.b1 PHD_FILE: MSMg01no427_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:42 2005CHROMAT_FILE: MSMg01no427_m03.g1 PHD_FILE: MSMg01no427_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTACTTTCTCTCCTGTGGCTGGGATAAAATACTCTGACCAA
AAGCAACTCGGGTGAGAAAATGATTTATTGGGCTTATACTTCCAGGGAAT
AATCAATCATTGAGAAAAGTCAGGGAAGGAACTCAAGCAAGGTCTTGAAG
CAGAGTGCATGAGATCCGAAGCAGAGATCAGCAAGAACGCTGCTTGCTGG
CTCGCTCTCTGATTTGCTCGTAGGCTCATTCTTCACTTTCTTTCGTAGCC
TAGGACCACATAACCCAAGAATGGTTTTTTTTATGGAGAGTTGAGACCCC
CCTGAATCAGTTAATAATAAAGAGCACCCCCTGCAGATATGTTCACCGGC
CAATCTGATTTGTGGCAATCTTCCAGTTAATAAGACTGCTTCACATGACC
CTGGGGTGTGTCAAGATGACAGTTCCAGCTAACGAGAACACCCAGCTAAC
TCCTTATATATGCTTCTAGGGGGCACATATGAATGGTAGCAGCTCTATTG
TGTGGCTGTGGAGAGCAGTGGTGACTCCTGAGGCTGGAACCAGCGCTAAT
CTCCAACAGTTTAATGACTTGGAGTAGGCTGCTTTATGTTAACTTTCTGG
TCCTTGGTTTCTCATCTGTGAAATATGATGAACGTACTATCGAACTCTTT
GGCCTGTTGAGAGCAGAGCCTGGCCTATGGCACACGGGGATACCAGG
CCCTACTACTGCCTCNTGACTACACAAATGTATNTAGNCACTNATNCCAT
GATATAGACNGNCAGNNCTGGTCANTACTCATAGTTGCTTATCTCCTCTA
TNCTANATTTTGTGTNNTGTACNTTTNTGTAACACCTACGCAGATTTATT
ATAANATCGCTACACACGAGTGGATGACATATATTNATACATACAANCAT
ACANNNANNTCNCATTNNTTCATCTCTCTTTTCAGTGTATCACATCACCT
CTACTTCCTACTACTCGNCTACAANCNACTCNTNTACGCCACATAAACGA
TAATANTATNGTATGCCCNATTANTNNCCTACNTCCNTCCTGGTCTTCTA
TNGTCTACTCCGATTAATNTCCTCTAGTACGATTACATCTCTATCTACAC
TACNANNANACTATACACACATTATCATCATCTCCTCTCTCTCTACTCTC
ATCTACTCTTCTCCCCTCTATCACTNANATACNNCANCACTATACACTAT
ACATTCTACTACTATTCTCACACATATCTANTNATGTTCTATCTATTCTT
CTCTCTGATCTATACTGTTTTANTCACTCCACGCTCGCCTACACACACAA
CATCACACACTANCNNTATACAACACTGCCTACTGAATCTCTACTACTCA
CNTGTTCATCTTATCAATCAACGTANATCACNACCTAGATATATTAATAT
CAACACANTAAATACTACAACTATACTATATCTACTCTNATAGCAGTATA
CTCTCATACTCTCACTCTCATCACATANCTATGANCACCATCATCTCTAC
TACTCATCTCCTCTCTCTGCTACTCCTTACCTACACTACTACTTCATATT
CTCACTCATCTCATCTTACTATACCCNCTCNACACCTANTATACTTATAC
ATATNACCTCCATACTACCACATCACTTCGAATCANCANACTATGCTATC
ATAAATAGCGTCACTACTANTATCNACACCTCCCCATCTACACTCTCTAC
GTTCACNACTACNTACATCCATATNATCTTATCCCGCTACACTACTAAGA
TCTACATCCCACCTCACTACCACTCTCACACATANATCAGTCTGATCANT
CAACNTTATAATGATACTCACCCCGACCCTATATATCTACCACCTGATCT
ACTTACTAATGTACACNTACTATATACGANNAACGANCTACNTAATCTAT
ACTCACTCCTGAAAATTTACACTATTGAGATCATCTATCGCNCTACCCAA
TGATCAGCCTGACTCTACTACNCTTCATAGTATCGATGCATCTATATTCA
TANCACTCATCATCTTGACTCTCATNATCATATCTACTACATCATACTAC
TACTATATACTCATATATACTATACTCATACTAACACAANTNCTACTACT
CGACACTCTTATCNTNCTCATCATNCNTATATTCATACTCNCTACCNTCN
CACCCAGCCTAACGCACTNCATGACACGAGNCTANATATCTAATACTCCT
CAACGATNNTCTCTTTNTCACTAAAATCGTAATACTGCCATANCANCANT
GATCATGCTCTTAGTACTACATACTCATCATCTGATCACCATCACTNCAT
ATCCGCCGAGCTCTACATACGACAAATCTACTATGAGACGCTACTCATAC
ACACTCANCNCTANCCTGTNATATCTACTCACTACCACACTCTANTATCG
ATCACCCNTCATATCTACTGCTACTCAGCACCCACGTACTTCTCTACNTG
ACGCATGNTACTACACTGTCTANCACTCACTCATATNTATCATCAACTAA
TCACTCACACTCATGATTATACTACGTCTACGTCTCANCAATACTCTACT
CTANCTCANNACNNATTCGCACTCATGCTACTACATCCTCANCACACACA
CATCATCATCGTATCTNCATCATAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_m03.b1 MSMg01no427_m03.b1 CHROMAT_FILE:
MSMg01no427_m03.b1 PHD_FILE: MSMg01no427_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:42 2005
         (577 letters)



>mm_chr7_118795525_118796501
          Length = 977

 Score =  607 bits (314), Expect = e-178
 Identities = 365/390 (93%), Gaps = 15/390 (3%)
 Strand = Plus / Minus

                                                                       
Query: 191 ctcgtaggctcattcttcactttctttcgtagcctaggaccacataacccaagaatgg-- 248
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  
Sbjct: 977 ctcgtaggctcattattcactttctttcgtagcctaggaccacataacccaaggatgggg 918

                                                                       
Query: 249 -----ttttttttatggagagttgagacccccctgaatcagttaataataaagagcaccc 303
                       |||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 917 ccacc-------tatggagagttgagacccccctgaatcaattaataataaagatcaccc 865

                                                                       
Query: 304 cctgcagatatgttcaccggccaatctgatttgtggcaatcttccagttaataagactgc 363
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 864 cctgcagatatgttcaccggccaatctgatttgt-gcaatcttccagttaataagacttc 806

                                                                       
Query: 364 ttcacatgaccctggggtgtgtcaagatgacagttccagctaacgagaacacccagctaa 423
           |||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||
Sbjct: 805 ttcacatgaccctggggtgtgtcaagttgacagttccagctaattagaacacccagctaa 746

                                                                       
Query: 424 ctccttatatatgcttctagggggcacatatgaatggtagcagctctattgtgtggctgt 483
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctccttatatatgcttctaggaggcacatatgaatggtagcagctctattgtgtggctgt 686

                                                                       
Query: 484 ggagagcagtggtgactcctgaggctggaaccagcgctaatctccaacagtttaatgact 543
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggagagcagtggttactcctgaggctggaaccagcgctaatctccaacagtttaatgact 626

                                         
Query: 544 tggagtaggctgctttatgttaactttctg 573
           ||||||||||||||||||||||||||||||
Sbjct: 625 tggagtaggctgctttatgttaactttctg 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)