BAC Information

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BAC

Clone NameMSMg01-428P18
Chromosome7 (Build37)
Map Location 122,495,921 - 122,722,717
singlet/doubletdoublet
Overlap geneSox6
Upstream gene4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428P18.T7 (MSMg01no428_p18.b1)MSMg01-428P18.TJ (MSMg01no428_p18.g1)
ACCAG521822AG521823
length764769
length of high quality
(start - end)
305 (88 - 392)506 (72 - 577)
definitionCHROMAT_FILE: MSMg01no428_p18.b1 PHD_FILE: MSMg01no428_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:19 2005CHROMAT_FILE: MSMg01no428_p18.g1 PHD_FILE: MSMg01no428_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,495,921 - 122,496,225)(122,722,212 - 122,722,717)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAGGATCCGCGGAATTC
TCCCATTTCCTCACATCTCCACCAGCTCTAGACACTACTGCTTTCCCCCT
TGTTAGCTGTCTCCTGAAGCACAATGAACCCACTCCCTGGCCTTTATGGC
TTTACTTCATCAACAGTCAAGTTATTCTTCACTTTTGTGGGCTTCCATGT
TTGCTTTTCCTCAAAGGCAGCCACCAATTTTTACTCGATTTACAATTCAG
TTGTTTGGCATTTCTCTTAGTTGAGAATGTTTCACAGTTAGTTCCTAGAA
TTTTGACTTAATGTATTTTTCCTTGCACAGAAATGCTTAACAGGGTCAAA
CTCTGTCTTTATTGTTTATGAGTTCTGTGGTTTACCCTAAGAAAATAATA
ATATTTATGACCAATTTTAGTATCCACAACTTTGATTTTTATATTTCAAC
ATATGAGCTATCTGAAATTCATTTTTATATAAAATACAGAATATGAATTC
CTTTTCCCAAATGGCCAATCAACGTCCAATGCGATTTATGACTCAGCCTC
AATTTCCTGCCACTTACATGAAATACCATTCCTATAATACATTCCCCTAC
TTTTTTGCAATTTGCTTCTGAACCGAACAATTTTAGTCAATTGAACTATC
TTTCTAGCTCTGATACCCCTAAGGAATGCTACTCCATTTTTAATAAAAAC
CGCTTTCTAATGTCTCGGATACCTGGCCCCAATTTTATCTACCTCCTCCC
CGTTTTTCCCAGAC
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCAGGAAATCATGTTGTTTCATGAGTTCTGACAGTATGT
TTTGTCTTTTTTTTTTCTGAATATGCCATTAAACAGAAGGGTCATGTTTC
CCACCCACAAATTAACCCAAGGCTAAAGGGCATAAGTGACCGTTTTGGCA
GGAATTTGGACCCCTCTGAACATGGTGGTGGCCACTCTTACAACCACTGA
TAGATTGAGGTATGAATGCTTCTGTTGGTGCTTCTTTGGGTGGGGCACTG
GATGTTTCCAGCATATTTTATGCCTTTTGAAAAGTGGCAAACAGCCTGAA
TGCTAAAGCCAATCTCCTGTCTCCTAACCGGAAGGCCTTAAGCTAGGTTC
TATTCTGCCTTTTTCTTGCGAGGAGCTTCAAAGCTGTTGTTCCACACTCT
TACCCAGTCTCATGTAGTATGTCTTATGCTTAACAAATACTTAAACTTTA
AAGATTATTTCTATTTGACCATATTCTTCCCTGTAACCTTGATCAACTAT
AATTCTGATTCTAGAGTCCTACAGTTAATGGATAGAGCGGTCCTGAGAGC
CCACCACAGCTGTTAAATACTCGGGGCCTTACTCACAGCTGCTGACTCTG
CCTGAGCTGGGTTTCCCGACTTACTTTTCATAAGCTGAAGTTGGGTGCCT
GGGTCCCGCCTGTATTAATAAGTTTCCCAGGTGTTCTTCAAGAACTAATC
CCCCAAGAAAACCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_p18.b1 MSMg01no428_p18.b1 CHROMAT_FILE:
MSMg01no428_p18.b1 PHD_FILE: MSMg01no428_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:19 2005
         (305 letters)



>mm_chr7_122495721_122496425
          Length = 705

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctttcccccttgttagctgtctcctgaagcacaatgaacccactccctggcctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctttcccccttgttagctgtctcctgaagcacaatgaacccactccctggcctttat 260

                                                                       
Query: 61  ggctttacttcatcaacagtcaagttattcttcacttttgtgggcttccatgtttgcttt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctttacttcatcaacagtcaaattattcttcacttttgtgggcttccatgtttgcttt 320

                                                                       
Query: 121 tcctcaaaggcagccaccaatttttactcgatttacaattcagttgtttggcatttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcaaaggcagccaccaatttttactcgatttacaattcagttgtttggcatttctct 380

                                                                       
Query: 181 tagttgagaatgtttcacagttagttcctagaattttgacttaatgtatttttccttgca 240
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tagttaagaatgtttcacagttagttcctagaattttgacttaatgtaattttccttgca 440

                                                                       
Query: 241 cagaaatgcttaacagggtcaaactctgtctttattgtttatgagttctgtggtttaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaatgcttaacagggtcaaactctgtctttattgtttatgagttctgtggtttaccc 500

                
Query: 301 taaga 305
           |||||
Sbjct: 501 taaga 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no428_p18.g1 MSMg01no428_p18.g1 CHROMAT_FILE:
MSMg01no428_p18.g1 PHD_FILE: MSMg01no428_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:19 2005
         (506 letters)



>mm_chr7_122722012_122722917
          Length = 906

 Score =  948 bits (490), Expect = 0.0
 Identities = 502/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttgtttcatgagttctgacagtatgttttgtcttttttttttctgaatatgccatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 atgttgtttcatgagttctgacagtatgttttgtcttttttttttctgaatatgccatta 647

                                                                       
Query: 61  aacagaagggtcatgtttcccacccacaaattaacccaaggctaaagggcataagtgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aacagaagggtcatgtttcccacccacaaattaacccaaggctaaagggcataagtgacc 587

                                                                       
Query: 121 gttttggcaggaatttggacccctctgaacatggtggtggccactcttacaaccactgat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 586 gttttggcaggaatttggacccctctgaacatggtggtggccactcttacaaccacagac 527

                                                                       
Query: 181 agattgaggtatgaatgcttctgttggtgcttctttgggtggggcactggatgtttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agattgaggtatgaatgcttctgttggtgcttctttgggtggggcactggatgtttccag 467

                                                                       
Query: 241 catattttatgccttttgaaaagtggcaaacagcctgaatgctaaagccaatctcctgtc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 catattttaggccttttgaaaagtggcaaacagcctgaatgctaaagccaatctcctgtc 407

                                                                       
Query: 301 tcctaaccggaaggccttaagctaggttctattctgcctttttcttgcgaggagcttcaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 406 tcctaaccggaaggccttaagctaggttctattctgcctttttctttcgaggagcttcaa 347

                                                                       
Query: 361 agctgttgttccacactcttacccagtctcatgtagtatgtcttatgcttaacaaatact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agctgttgttccacactcttacccagtctcatgtagtatgtcttatgcttaacaaatact 287

                                                                       
Query: 421 taaactttaaagattatttctatttgaccatattcttccctgtaaccttgatcaactata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 taaactttaaagattatttctatttgaccatattcttccctgtaaccttgatcaactata 227

                                     
Query: 481 attctgattctagagtcctacagtta 506
           ||||||||||||||||||||||||||
Sbjct: 226 attctgattctagagtcctacagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)