BAC Information

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BAC

Clone NameMSMg01-430L20
Chromosome7 (Build37)
Map Location 46,877,212 - 46,877,553
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133
Downstream geneLOC100039050, EG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L20.T7 (MSMg01no430_l20.b1)MSMg01-430L20.TJ (MSMg01no430_l20.g1)
ACCAG523161AG523162
length780780
length of high quality
(start - end)
328 (48 - 375)342 (78 - 419)
definitionCHROMAT_FILE: MSMg01no430_l20.b1 PHD_FILE: MSMg01no430_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:44 2005CHROMAT_FILE: MSMg01no430_l20.g1 PHD_FILE: MSMg01no430_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAACATTGGCGGCGCTAAACGACTCACTATTTTCAGAGGATCCGCGGAA
TTCTCCACAGATCTGTCTCTAATGTGTGAGATGCACTTAAAGAAATGTCC
ACTATCCTTAGTCATCAAGGAGACACAAATAAAAATGACTGCAACATTTC
ATCTTACACCCCTCAGAATGGCTAAGATCAAAAACTCACATGACAGCACA
TACTGGCAAGGTTGTAGAACAAGAGGAACACTGCTCCATTTCTGGTGTGA
GTGTGAACGTGTACAACCCTTTGGAAATCAATTTGGCAGTTTCTTAGAAA
ACTGGAAATAGTTCTAACTCATTAACCAGCTATACCACTCCTGGGCATAT
ACCCAAAAGATGGTTCACCATATGAAAAAAACCAAAAACAAACCAAAACT
AAAACAAACAATAAAAAAACTTGCTCAACTATGTTCACAGAAGCTTTAGT
CACTATAGCCAGAACTGGAAGCAACCTACATGTCTCTCAACTGAACAATG
GATAAAGAAAATGTGCTTCATCCACCGCAATGCATCCTTACTCATCTAGG
AAATACATGTGCACTCCTGATTTTCTCATTTAATTGAATGACACCCTAAT
ATTATGACTTTACCACTCCCCGTACCTCCCTAACTGCACTGTCACCTATT
CCCCTTATTATTCTTCATCTCCGTTCTTTCATACCCCTTATCTCCCATTT
TCATTACTCCCTACTATCCTTTGTCACTAACCTCTTCTCCTTACTGAATA
TTTTTTCTCTTTCCCCTCTCCCAACAATTC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGCTACAGTTCCCCAAAGCC
TGTTCCTGCTTACTGCAGGTTACTGTACATATATGGCAGGCCTGCCCAGG
CCTAAAAGTCCCTTAAGTTTGTATTACTTTGCTTAGCAGTATGGAAATAC
TTAGGGAGGATCCACTAGGAGGGTTAAATGCCCTGGAGGCATGATGCCTG
ACTTCCCAGCAACTCAGGAGGCTGAGGCAGGATCACCAAGCATTCTAGCT
CTGCCTTTGTTATGGAATGAGTTCAAGGTCAGGCTTGGCAACTTAGAGAG
GCTCTGTCTCCAAAAGTAAAATGAAATCTCAGTGGCAAATGGCACATTCC
AAGCGTCTACAAAGTCTTGGGTTTTATCCTCAGGGCTTGAAAGGAAACCA
GTGAACACAGCCTCGACAAAAGAATCCTGAATTGCTATACAGGACGTGCC
CTTTTTTACAACTAAACTCGTGTCCTTCTCCATTTCCCTTCCTACCCATT
GTATCCCCCTTGGGCTCGCTCCCCTCTTTTTTCCTTCCGCCCTCACTCCT
TCTCCCTCACCACTGTCCTTCCCCTTTTCCCTTCCCTCTCCCCCCCCCTT
ATACCTTTCTTCTTCCTCTCCTCCCCCCCTTCCCCTCCTCCTTGTTTTTC
CCCCCCCCACGATCCCCCTTCGTTCCCCTACTTATCCACCTACCTCCCCC
CCCTTCCTCCCCCATTTCCCCCCCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l20.g1 MSMg01no430_l20.g1 CHROMAT_FILE:
MSMg01no430_l20.g1 PHD_FILE: MSMg01no430_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:44 2005
         (342 letters)



>mm_chr7_46877198_46877939
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagctacagttccccaaagcctgttcctgcttactgcaggttactgtacatatatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 accagctacagttccccaaagcctgttcctgcttactgcaggttactgtacatatatggc 297

                                                                       
Query: 61  aggcctgcccaggcctaaaagtcccttaagtttgtattactttgcttagcagtatggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aggcctgcccaggcctaaaagtcccttaagtttgtattactttgcttagcagtatggaaa 237

                                                                       
Query: 121 tacttagggaggatccactaggagggttaaatgccctggaggcatgatgcctgacttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tacttagggaggatccactaggagggttaaatgccctggaggcatgatgcctgacttccc 177

                                                                       
Query: 181 agcaactcaggaggctgaggcaggatcaccaagcattctagctctgcctttgttatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agcaactcaggaggctgaggcaggatcaccaagcattctagctctgcctttgttatggaa 117

                                                                       
Query: 241 tgagttcaaggtcaggcttggcaacttagagaggctctgtctccaaaagtaaaatgaaat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tgagttcaaggccaggcttggcaacttagagaggctctgtctccaaaagtaaaatgaaat 57

                                                     
Query: 301 ctcagtggcaaatggcacattccaagcgtctacaaagtcttg 342
           |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 56  ctcagtggcaaatggcacgttccaagcgtctacaaagtcttg 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)