BAC Information

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BAC

Clone NameMSMg01-432A18
Chromosome7 (Build37)
Map Location 131,175,056 - 131,175,474
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneTnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432A18.T7 (MSMg01no432_a18.b1)MSMg01-432A18.TJ (MSMg01no432_a18.g1)
ACCAG524162AG524163
length799791
length of high quality
(start - end)		480 (42 - 521)419 (71 - 489)
definitionCHROMAT_FILE: MSMg01no432_a18.b1 PHD_FILE: MSMg01no432_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:37 2005CHROMAT_FILE: MSMg01no432_a18.g1 PHD_FILE: MSMg01no432_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGTTCCTCCTGCACCATGTCTGCCTGGATGCTGCCATGTTCCTGCCT
TGATGATAGTGGACTGAACCTCAGAACCTGTAAGCCAGCCTCAATTAAAT
GTTATCCTTATAAAAGTTGCCTTGGTCATGGTGTCTGTTTACAGAAGTGA
AACCCTAACTAAGACAACACATATGCACACACTATACTCCACCCACAAAC
ATACACACATACATATAAACATATATACACATACCACATAGGCACCACAT
ATGACATACATACACATTACATGCATATTCACATCTGCATTCTACAATAC
ACATACATACCACAATATGCACACACTACACATACACACTATATACAACA
CAACATAGAAACATATATACACTATGAACCACACATCTCACAATACACAC
TACATAACACACAGCATGCAAACATATACACATACATTATACATCACATA
CATATACCACAGTATACTACATAGCACACATATACATACCCCACATACCA
TATATACATTACATACCACATTGCTTAGAAAAAAACACCCTCTATATACT
ACACCGCAAAAAACACCCCCCTTATACCCCCCCCCCCGAACACCCCCAAT
ACCCTTACACCTAACCCCCCCTTGGTTGGTTCACTCTCCCCCAACAAAAT
CCATGGTAAACATAATATTCCCAAATAACCCTTAATTATACCTTAACATT
GGGGGGTACCCAAAAAAACTCCCCTTTCCTTTATAACCCCCCCCTCTTT

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTAAAACAAGTGCCAAGCATTGCTGCC
TAACTAGGTATTGGCCATGGTCACCCAGGAGTCAATGAGAGTTATACATA
AGATCCAACTTAAACATCTCATATTCCAGAGGAGCAGGCTTAGAGTAACC
TGAGAATCAACTGGTAAGTCTGCAGAGCTATGGGACATGAACAGCAAGCA
CTTGATGGACAGAAGGTAGGACTTTCCAAGGATCTATACTAAGAACTACA
AGATGACGTCATCAAGAGAAAAGGGAGAATTGCTAAGCACAGAGGATACT
GTATTTGGACATTTGCCAAATACACATCTGAAAAAGCTTCCCTGTGATGC
AATAGAGATTAAATGAGGATAGTAATGCACATGAATTGATGCTTATAACA
TGAAAGAGATTATTTTTACCTAAAATATGAACATTGGTAAACCTCACATC
TTAATGACACATAAGAAATTTCATATTGTGNTGGGCTGGATAGTTTTTGC
CAATTGGACAAAAGAAAAGTTGCCTGAGGATGAGGAACCCTCCATTGGTG
AATTGCCTCCTCCACATATTATTGTCCAACAACCCGTGGCGGCTTTTTTT
ATATTAATCGGCGGGGGGAGAGAGGCCTTCCCCTTTTCTGTGGGATCTTT
CCTTGGCTGGTGGTTACTTTTCTCTTTCTCCATTTGCCGTTTCTCCCTTC
TCCCTCCTTCTCCTTTTATTTTTCTCTTCCTTCTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_a18.g1 MSMg01no432_a18.g1 CHROMAT_FILE:
MSMg01no432_a18.g1 PHD_FILE: MSMg01no432_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:37 2005
         (419 letters)



>mm_chr7_131174856_131175674
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctaaaacaagtgccaagcattgctgcctaactaggtattggccatggtcacccagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actctaaaacaagtgccaagcattgctgcctaactaggtattggccatggtcacccagga 560

                                                                       
Query: 61  gtcaatgagagttatacataagatccaacttaaacatctcatattccagaggagcaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtcaatgagagttatacataagatccaacttaaacatctcatattccagaggagcaggct 500

                                                                       
Query: 121 tagagtaacctgagaatcaactggtaagtctgcagagctatgggacatgaacagcaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tagagtaacctgagaatcaactggtaagtctgcagagctatgggacatgaacagcaagca 440

                                                                       
Query: 181 cttgatggacagaaggtaggactttccaaggatctatactaagaactacaagatgacgtc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 cttgatggacagaaggtcggactttccaaggatctatactaagaactacaagatgacatc 380

                                                                       
Query: 241 atcaagagaaaagggagaattgctaagcacagaggatactgtatttggacatttgccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 379 atcaagagaaaagggagaattgctaagcacagaggatactgtatttggacacttgccaaa 320

                                                                       
Query: 301 tacacatctgaaaaagcttccctgtgatgcaatagagattaaatgaggatagtaatgcac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 319 tacacatctgaaaaagcttccctgtgatgcaatagagattaaatgaggatcgtaatgcac 260

                                                                      
Query: 361 atgaattgatgcttataacatgaaagagattatttttacctaaaatatgaacattggta 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgaattgatgcttataacatgaaagagattatttttacctaaaatatgaacattggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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