Query= MSMg01no433_a13.b1 MSMg01no433_a13.b1 CHROMAT_FILE:
MSMg01no433_a13.b1 PHD_FILE: MSMg01no433_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:00 2005
(566 letters)
>mm_chr7_106427779_106428747
Length = 969
Score = 1019 bits (527), Expect = 0.0
Identities = 556/567 (98%), Gaps = 7/567 (1%)
Strand = Plus / Minus
Query: 5 gaattcatgtgttttccctcatgacagcagtcccctgcaaacgggatcctgctcttgtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattcatgtgttttccctcatgacagcagtcccctgcaaacgggatcctgctcttgtca 710
Query: 65 ccgggaacagagagacccggtgccccagcctttcatgcttttaagatgcct-cagtgaac 123
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 709 ccgggaacagagagacccggtgccccagcctttcatgcttttaagatg-ctgcagtgaac 651
Query: 124 ttgaaataaaactattaatctccctgcattattattagggaattaagaccacgtaaatcc 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttggaataaaactattaatctccctgcattattattagggaattaagaccacgtaaatcc 591
Query: 184 aacctaattccccgcttttacagcataagcctctttcacaacagactaaaagccccgcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aacctaattccccgcttttacagcataagcctctttcacaacagactaaaagccccgcag 531
Query: 244 gataggtaaggatttagaaagaagatggaagaggctcagggggaaaaccgagtgaaattg 303
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gatagg-aaggatttagaaagaagatggaagaggctcagggggaaaaccgagtgaaattg 472
Query: 304 acattagctaagtgtggggctcaggatgatgggattgggccagagcacctggatgtcaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acattagctaagtgtggggctcaggatgatgggattgggccagagcacctggatgtcaat 412
Query: 364 gtgcaaacagggctgagaacccccaggg-aag---caggtgtggaagcaggaaggctaga 419
|||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 411 gtgcaaacagggctgagaacccccagggaaagcgtcaggtgtgaaagcaggaaggctaga 352
Query: 420 cacacaagctaggcctgctcctagaaagctcagacctggagctgaagtgctgggcctcac 479
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 351 cacacaagctaggcctgctcctagaaagctcggacctggagccgaagtgctgggcctcac 292
Query: 480 cctggagggacagggcccacagacagcttaggacaaggagggagataccctttacccaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cctggagggacagggcccacagacagcttaggacaaggagggagataccctttacccaac 232
Query: 540 tccaacacacaaacaaggttgatggag 566
|||||||||||||||||||||||||||
Sbjct: 231 tccaacacacaaacaaggttgatggag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 969
Length adjustment: 10
Effective length of query: 556
Effective length of database: 959
Effective search space: 533204
Effective search space used: 533204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_a13.g1 MSMg01no433_a13.g1 CHROMAT_FILE:
MSMg01no433_a13.g1 PHD_FILE: MSMg01no433_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:00 2005
(488 letters)
>mm_chr7_106261577_106262464
Length = 888
Score = 920 bits (476), Expect = 0.0
Identities = 485/488 (99%)
Strand = Plus / Plus
Query: 1 aagggcttacactaataaggctatagggaaagacacacataaaacaattcccacccaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagggcttacactaataaggctatagggaaagacacacataaaacaattcccacccaata 260
Query: 61 caattttgtaataccaaccaaaacagaacatactttctcagtgtcccaagaactccactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattttgtaataccaaccaaaacagaacatactttctcagtgtcccaagaactccactc 320
Query: 121 cctagaacttaccctaagggctggctaacacaaaacaatgcactagtaaaagttagccaa 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaacttaccctaagggctgactaacacaaaacaatgcactagtaaaagttagccaa 380
Query: 181 tgcagcaagagacaaaacaacctcaaagtcctccgcagggccaaccacaggcaccaccag 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tgcagcaagagacaaaacaacctcaaagtcctccgcagggccaaccacagacaccaccag 440
Query: 241 agagcagctagtcaatgcaaagccagaagcagtgcatcagagatgccctctagggcagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcagctagtcaatgcaaagccagaagcagtgcatcagagatgccctctagggcagac 500
Query: 301 atataaagtgaaaaatgccaagcgcacagtatctacgcacacatgccatctgcaagggaa 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 atataaagtgaaaaatgccaagcgcacagtatctgcgcacacatgccatctgcaagggaa 560
Query: 361 ctgctgggaatggaggaagaagatcttagctttcttctgtttctgcaaataatttaggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctgggaatggaggaagaagatcttagctttcttctgtttctgcaaataatttaggaa 620
Query: 421 agacaaacaggaaaaagatagtagcagttaccaggacagaaagggaaacagcttgatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agacaaacaggaaaaagatagtagcagttaccaggacagaaagggaaacagcttgatgag 680
Query: 481 acattgat 488
||||||||
Sbjct: 681 acattgat 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
