BAC Information

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BAC

Clone NameMSMg01-433E07
Chromosome7 (Build37)
Map Location 18,891,179 - 18,891,531
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1
Downstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E07.T7 (MSMg01no433_e07.b1)MSMg01-433E07.TJ (MSMg01no433_e07.g1)
ACCAG525090AG525091
length725776
length of high quality
(start - end)
521 (41 - 561)353 (68 - 420)
definitionCHROMAT_FILE: MSMg01no433_e07.b1 PHD_FILE: MSMg01no433_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:19 2005CHROMAT_FILE: MSMg01no433_e07.g1 PHD_FILE: MSMg01no433_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCATTTCACTTCACCTTGGAGAAACCTGGATGCAGGGTGGGCAAGTCAG
CCAAGGACATCAGCCTCTGTCTAGATCTTGGGTTCCTTCATAAGGAACCG
TTCTTGAGAAAGTCTTGAGGGAAGAAAGAAGGGCCTGTGAAAGTCATGGG
CATCTTACAGAGCTGAGTACCAGAAACCCTTGGTTCCACACCTATGTTCC
ACCCTCACAACCTGTGGGCCCTGAGATGCTTTGTGCTAGGGCTGGATCTT
GACTTTCTGTCTGCAGAGAAGAATGCTTGTTGTAGACAATGGCTTGCTCC
ATGTGGAACCAAACCGTGTACTGACATGAGATCCAGAATTAATCTATGTC
TCCTGGTCATCTTAGTGACCCAGAGGGAGACCACATCAGGGCAGATTACC
AGGCCATTAACCCATTGTCCTGTTAGGCCTATGAGACTTCTAGGAAAGTC
AGTTTCCCATCAGAAAGAGAGAAAGGACACAGATCCTACTGACAAGTTAT
TTTCTTTTGAGGCCAGCACATTCTTAACTATAAGCAAATAGAACAGGCTG
TACCTATGTGGACAGTTCCCCAGACCTGAGTGGCAGTTCCTTCACTGAAG
AAGAGGGCACAGCCTGGTGGTATTCCCAGAATAATTATAAACCCATATAC
CCGGAGGCCGGACCTCCTATTTTTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTGAAATACCTCTGTCTTCTGCCTGGGTGATT
CCACTCTGGCAAGGCTGCCTTTCTCCATGGGAGATGCCAGGATACAGGGT
TTGTATGAGGCCCCTTGGCAGAGCAGTATGCTCAGAGACACAGGAAATAC
CCAGTAGTTCAGAGAAAGGTTTGTTGGGGCTTTGGGGATGGGACTGAAAA
CCTCATTGAAAGTCAGTGTCTCCTGGGAATAATTCCCTGAGTATTGATTA
TGTGTCTGTATGTCACACCTTCCTGAGATTTCCTGCAGAGCTTTCCTGAG
GCTAGAGTAGCAATGGTGGCCAGACTCAAATGCACTGATGCCTGAGCACA
GGTGAATCATATTGTTCACTGTGGCTCTCGAGACCTCTTGATTCTAACCA
GTTCTGGGTAAATCTGAGCGTGAGGTGAGGTCGCCTCTGGAGATTTTTCT
CATACTTCACGCTTTTCTTGGATTTTCTGCTTCCGTTTCCCTTCGTCCGC
CTTTTTATTACCTCCTTCTTTCCTGTCCCCTGCTCCCGTGGTTATTTATT
TCCGTTCCTTCTTCTGTCTTCCTTGTCTTTGTTTTTCCTTTCCCTTCCTT
CCTTTTTCCTCCTTCTTCTCTCACTCTCTTCTCCCCTCTTCCTTTTTCTT
TGTTCCTACCCACCTATATTTCCTCCCTTCCATTTCCCTCTCTTTTTCCC
TTCCTTTTTTCTCCCCCTCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e07.g1 MSMg01no433_e07.g1 CHROMAT_FILE:
MSMg01no433_e07.g1 PHD_FILE: MSMg01no433_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:19 2005
         (353 letters)



>mm_chr7_18890979_18891731
          Length = 753

 Score =  621 bits (321), Expect = 0.0
 Identities = 345/353 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaaatacctctgtcttctgcctgggtgattccactctggcaaggctgcctttctcca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cctgaaatacctctgtcttctgcctgggtgattccactctggcagggctgcctttctcca 260

                                                                       
Query: 61  tgggagatgccaggatacagggtttgtatgaggccccttggcagagcagtatgctcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggagatgccaggatacagggtttgtatgaggccccttggcagagcagtatgctcagag 320

                                                                       
Query: 121 acacaggaaatacccagtagttcagagaaaggtttgttggggctttggggatgggactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaggaaatacccagtagttcagagaaaggtttgttggggctttggggatgggactga 380

                                                                       
Query: 181 aaacctcattgaaagtcagtgtctcctgggaataattccctgagtattgattatgtgtct 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct: 381 aaacctcattgaaagtcagtgtctcctgggaataattcactgagtattgattacgtgcct 440

                                                                       
Query: 241 gtatgtcacaccttcctgagatttcctgcagagctttcctgaggctagagtagcaatggt 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 441 ggatgtcacaccttcctgagatttcctgcagagctttcctgaggctagagtaggaatagt 500

                                                                
Query: 301 ggccagactcaaatgcactgatgcctgagcacaggtgaatcatattgttcact 353
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccagactcaaatgcgctgatgcctgagcacaggtgaatcatattgttcact 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)