BAC Information

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BAC

Clone NameMSMg01-433F15
Chromosome7 (Build37)
Map Location 151,449,021 - 151,449,327
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433F15.T7 (MSMg01no433_f15.b1)MSMg01-433F15.TJ (MSMg01no433_f15.g1)
ACCAG525154AG525155
length773783
length of high quality
(start - end)
242 (64 - 305)309 (66 - 374)
definitionCHROMAT_FILE: MSMg01no433_f15.b1 PHD_FILE: MSMg01no433_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:25 2005CHROMAT_FILE: MSMg01no433_f15.g1 PHD_FILE: MSMg01no433_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGCATCCGCGGAATTCTCTG
TGTATCGCAGATGCAGATGGTTTTGAGCTGCCATGGCAGTCCTGGGAATT
GAACCCAGGTCCTGTGGACGAACAGGAAGCATTCTTAACTACTGAGCCCC
CTTTCCAGCCCTTGAACTCATATCTTTAAAGTTTGTTGTTTAAATACCAC
TAGTTCTTTTCCTTGTTCCCTAAATAAATACATGTTCAGTATGGACACCT
TCGAAAGCGCGCGCATGCGCGCGCGCGCGCGCGCGCACGCACGCACACAC
ACACTTTTTTTTTTCACACACTCTCTCACACACACACACACTCTCTCTTA
GCTCCTTACAGATAAATGCATTCCCTCCACTGTGCGACCTGGGAGTTTTC
AGTTCTTGTTCTCCTCCCTGCCTTAGATACATATTTTGTTTTAGTGCACT
CTGCACCGTATTGTCCTTCCTTCTTATTATCTTTCCCCTTATCACCATAT
CCTCTTGCTTTTTTCCCCACCTTCTTCTTGCTTTTCTTCTCCTTCCATTA
TTCTTTTGCTTTTTTCTCTTTCCTTTTCCCTTCTTGCGTTGGACCCTCCC
TCCCATCTATCTTTTCTCCTCTTCCTCGATTTCTCCCCTTTCCCCTCCTT
TTTTCCCCTTCTTCTCTTCTTTCCCCTTTTATTCTCTTCTCTTCTCTACT
ACCATATTTTCCACTCTTTTCTTTTCTCTCCCCCCCCCCATTTTTCTTCT
CCTACTCATCTACTTTTATTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGGGCTGGGTGGGACAGAGTAAGGAGGGGTCTGT
TCATCACACCCTACTATCTCCGAAACATTTTGAATCTTTTACCAAGTACC
TATTTTCTATTACCAATTCAAAAATGTACGAATGGTACTTGAAAGTCTTG
AGAAGAAGTAGCTGCGGGTGGCAGGTTGTCACCTGTTGAAGTGGCACAAT
CTGTTGCCCTTCTCCATCAATCTCCAGGAGGAAATTGGGTTTCCTGAGGA
GGAGGAGCAATAGTGGTGGCTTGCCTTGGCAGGCATTCAGGAAGTGCTCC
TTCCAAGCAGGCTGTGCTAGTGGCTATGCTGCTGTGTGTAGTGGGGACCT
GGAGGACCTTGCTGCTAGCTAGTCTTGGTTCTGGTACCTACCCACTGTCT
CATCAAGTTCTCCCTGGTAAACCTCAGAGAGGGTGGATAGCCCACCTATC
TTGCTTCTCCTCGTCTATATCCATGCCTCCTCGCTCATTTCACGTTTCTT
TCATATCCCTTCTTTCCCCTACGCCTTTCCTACCATTTGTTTATGTCTGT
CCCCTCTACCACTTACTTCCTTTTTCTCTTCCTTTCCCTTATTTTCCTTT
TTCCCCATCTTTTATCTCCCTTCCCCTCTTTTTCCTTTTCCTTCCCTCCT
TCTCTCTTCCCCCTCTTTCCTTTTTTTCCCTTCTCTCTCTCTCTTTTCCC
CCCTACCCCCTTGTTTCCTTTCTTCCCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_f15.g1 MSMg01no433_f15.g1 CHROMAT_FILE:
MSMg01no433_f15.g1 PHD_FILE: MSMg01no433_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:25 2005
         (309 letters)



>mm_chr7_151448821_151449527
          Length = 707

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggctgggtgggacagagtaaggaggggtctgttcatcacaccctactatctccgaaa 60
           |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||
Sbjct: 507 aggggctgggtgggacagagtaaggagggggctgttcttcacaccctactatgtcctaaa 448

                                                                       
Query: 61  cattttgaatcttttaccaagtacctattttctattaccaattcaaaaatgtacgaatgg 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 447 cattttgaatcttttaccaagtacctattttctattaccaattc-aaaatgtacaaatgg 389

                                                                       
Query: 121 tacttgaaagtcttgagaagaagtagctgcgggtggcaggttgtcacctgttgaagtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacttgaaagtcttgagaagaagtagctgcgggtggcaggttgtcacctgttgaagtggc 329

                                                                       
Query: 181 acaatctgttgcccttctccatcaatctccaggaggaaattgggtttcctgaggaggagg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 328 acaatctgttgcccttctccatcaatctccaggaggaaattaggtttcctgaggaggagg 269

                                                                       
Query: 241 agcaatagtggtggcttgccttggcaggcattcaggaagtgctccttccaagcaggctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agcaatagtggtggcttgccttggcaggcattcaggaagtgctccttccaagcaggctgt 209

                    
Query: 301 gctagtggc 309
           || ||||||
Sbjct: 208 gc-agtggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 707
Length adjustment: 9
Effective length of query: 300
Effective length of database: 698
Effective search space:   209400
Effective search space used:   209400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)