BAC Information

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BAC

Clone NameMSMg01-433L06
Chromosome7 (Build37)
Map Location 149,897,389 - 149,897,588
singlet/doubletsinglet
Overlap genenone
Upstream geneMuc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2
Downstream geneEG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433L06.T7 (MSMg01no433_l06.b1)MSMg01-433L06.TJ (MSMg01no433_l06.g1)
ACCAG525424AG525425
length782879
length of high quality
(start - end)
200 (63 - 262)63 (70 - 132)
definitionCHROMAT_FILE: MSMg01no433_l06.b1 PHD_FILE: MSMg01no433_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005CHROMAT_FILE: MSMg01no433_l06.g1 PHD_FILE: MSMg01no433_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCCCT
ACTTATCCTGATACCAATTTGGCTTAGTCAGGGTTTCTATTCCTGGACAA
AGCCTCACGGAGCTTAAGGCATTCCTCAGAGTCTCAATAGGGCTTAAAGA
TTTTCCCATGTTCACTAAGATTCAAAGCTTCCTTAGAATGTTTCAAGGCT
TTTCCAGAGTTATCCTCAGGGCCCAGGTTTTTTCCAGGTTTTCAATAGTC
TTCCCAGGAAATCACTGGGGTCATAGGCCTTCCCTGTGTTCTCACTGGTT
CTTAATTTTTCTTTGTAGCCTAAAATGCGTTACCCCGAGTCTTGCTGGAA
CCTAACAATTTCCCAAGCTCTCATAGGTTCTGTATCATCTCCATTGGTTT
TTATTGTCCCCCCACCTCTCTCCCAATTCTTCACTGTTCTCCTCCTTTTT
TCCGCCCGTCCCTTCTTTTCTCCCTACTCTTTTTCCCTTCATCACCCTTT
CTCTCCCCTTTTTTTTCCCCCCCCTTTCTTTTCCCCTTCATGTTTCCTAT
CTCTTCTTTTCTCTTGTCTTTCCCCTACTTCTCCGTTTTTCCTCTTTTTT
CCTTTTTTCTCATTCCCTTCCTTTTTCTCCTTTCTCTTCTTTTTCCTTCT
TCTTCATCCTGCCCTTCTCTTCTTTTTTCTCTTCACCCCCCCCCACCCCA
CCGACCTTCGTCATGCTTTCCTTCTCTCTCTCCCCACACAACTCTTTTTT
TTTTTTCTCCCTCCCCCTCGATCCTCCCTTCA
CTATGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGAACCCATGTAAAGCTGGGCACAGAAGT
GTCAGGTGTGTGTGTATGTGTGTGTGTATGTCGTCTCGTNCCTCCTTCTC
CCTTTTCTCCCTCCTCCTCCTCCTTTCCCCTTTTCTCTTTTCCCTTTCCC
TTCCTCCCTTTTCCTCTTCCTCCCTCCTCTTCCTTTCCCCTCCTTCCTCT
CTCTCCTCCTTTCTCTCCTTTCTCCTTCCTTCTTTTTCCTCCCTCTCTCC
CTCCCTCCTCCTCCCTTCCTTCTTTTCTTCCCTTCCCTTCTCCTCCTTCC
TTTCCCCCTCCCTTCCTCCCTTTCCCCTTTCCCTTCCTTTTTTCTCCTTT
CTCCCTTTTTCCCTCTCCCCTTCCCCTTCTCTTCCTTCCCTCCCTTTCCT
CCCCTTTTCCCCCTTTTCCCCCTTTTCCCCCTTTTTCCTCCTCCCCTTCC
TTCCCCTTCCTTTCTCCTTTTCCCCTTATTTCCCCCTTTTTCCTTCTCCT
CCCCCCCTTTCCCCCCCTTTTCCTTCTCTTTCCCCTTTTCCCTTCTTTTC
CCTCTTTTTTCCCCCTTCCCCTTCCCCCCTCTTCTCCCTTTTTTCCTTTC
CCCTTTTCCCCTCTTTTCCCCCCCCTTTCTCTTTCTTCTCCTCCTTCCCC
CGCCTCTCCTCTTCCCTCCCTCCTTTCTCCCTATCCTCTTCTCGTCTTAC
CCTCTCTCCTTTTCCTTTCTCCTCTTTTCTCTTTTCCTTTCTTCTCTCCC
TACACTTCTCCCCTCTTTCCTTTTTCTCCCCTTTTCTCTTTTTCCCTTTT
CTCTTCCCCTTTTTCCTTTTTCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_l06.b1 MSMg01no433_l06.b1 CHROMAT_FILE:
MSMg01no433_l06.b1 PHD_FILE: MSMg01no433_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:52 2005
         (200 letters)



>mm_chr7_149897189_149897788
          Length = 600

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaatttggcttagtcagggtttctattcctggacaaagcctcacggagcttaaggcat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaatttgtcttagtcagggtttctattcctggacaaagcctcacggagcttaaggcat 260

                                                                       
Query: 61  tcctcagagtctcaatagggcttaaagattttcccatgttcactaagattcaaagcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcagagtctcaatagggcttaaagattttcccatgttcactaagattcaaagcttcc 320

                                                                       
Query: 121 ttagaatgtttcaaggcttttccagagttatcctcagggcccaggttttttccaggtttt 180
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttagaatgttacaaggcttttccagagttatcctcagggctcaggttttttccaggtttt 380

                               
Query: 181 caatagtcttcccaggaaat 200
           ||||||||||||||||||||
Sbjct: 381 caatagtcttcccaggaaat 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)