BAC Information

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BAC

Clone NameMSMg01-437H13
Chromosome7 (Build37)
Map Location 151,725,150 - 151,918,067
singlet/doubletdoublet
Overlap genePpfia1, Fadd, Tmem16a
Upstream geneNap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn
Downstream geneLOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437H13.T7 (MSMg01no437_h13.b1)MSMg01-437H13.TJ (MSMg01no437_h13.g1)
ACCAG528296AG528297
length755767
length of high quality
(start - end)
167 (427 - 593)189 (128 - 316)
definitionCHROMAT_FILE: MSMg01no437_h13.b1 PHD_FILE: MSMg01no437_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:52 2005CHROMAT_FILE: MSMg01no437_h13.g1 PHD_FILE: MSMg01no437_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,725,150 - 151,725,316)(151,917,879 - 151,918,067)
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCATCTCCTGCTTATGGGTGTAATGTGTCCTCATGCCTCAGG
CTTCATCATGACTGCATTTATGGAGCGGACCTTCTTATACTGTAAGGCAA
AAATTAACAATTCCTCCCTTAAGTTGCTTCTGGCCAGTTACCTGCTCATA
GAAACAAGTAAAGTAACTAATACAGAAAATTGGAACCAGTGAAGAAGACT
GTTGCTGCTAACCTGACCATGTGATTCTCCGGCCTAGTTTGTGTGAGGCA
TGGGAAAGACTGAAGCTACAGGCTAGAGAAACATGGAATGCAGTAAACAG
AGCTTAATGGACCACTCTGACAGGAGCTTGAAAGACCAGAATGCTAAAAG
AACCACACAGAGAAGGCCTGGCTCAGGGGATAAGGAAATCCCAGACAGCA
GGACCTAGGCTGTACAGTGTGACTGCTGCTCACTTTGCTTCTCAGCTCTG
TACTACAGAGCCGACACAAAGTGTGGCGGCTGGGAGGCATTAAGCTTATG
ACAAGGCAGGTGCAGAGAAAGCAACTGTCATCTAGAGATTAGCACCACTG
GAGAGACTCTCACTCTACACTGGGACAACAGCAAAGATGTCCTGAANAGC
AAGACCCTCCGGACTTAAAGGCTCCAGCTCATGAACACTCAGATCCCATT
AGATAAATAAAGTAAATTAACCGGACCGAACTTTTGCTAAAATAGAAAGG
CAAGG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCTTGGGCCCCAGAACTGGGGTCGCTG
GCTTTGGAGGAAAATAAAGTTTTCTGTGACTATCTGGCTGCTGCAGGGAG
CCACACCCAGAAGGCAGGGCTCACCATAGTCTCCTATCTTTCCCCAGCCC
AGCACCCAGCATTGTTCACCATTCCGCCTCCATCAGGACTTGGCCTTTGG
TGTCAGGCACACGTGACATTTTTCATGCTGTGTAATGAATTGCTAAATGC
CTTTCCAACCTTCAGTGATCCTCNTGATGGTGATCACGCGGCTATTAGGC
AGACAAATTACTAGTTTTGCGTGTTTGTCAGTGGGTGGGCTGGCGTGTCT
GGATGTGCCCGCCACACCTTTTACTAGCGGAACCTGCCTCCCATTAATAA
TCCTTGATCCAGCTTACATTGCGTCCGATACACTCTGTTGGTCCTGGATA
CACCCTGGATTCCTGTACGTCCGCCATATGCGAGTGACTCTGACGTCTAA
TGATTGTTCCCCCCGTTGTCTAGAGTAGCGTTTCCCATTAGGCACCCAAT
CCTTTTAGCCCCCCTTCTTATTTCGCCGTTTACACCTACCCTTTCCGACC
CGTTTACCCTTTTTTTTTTTTTTATTATACAAAACCATCTCTCTTCCCCC
TTTTCTCTCTTCCTTATACTTCTTTCCTCCTCTTCTCTTCCTATATCTTA
CCCCTTTCTACTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_h13.b1 MSMg01no437_h13.b1 CHROMAT_FILE:
MSMg01no437_h13.b1 PHD_FILE: MSMg01no437_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:52 2005
         (167 letters)



>mm_chr7_151724950_151725516
          Length = 567

 Score =  315 bits (163), Expect = 7e-91
 Identities = 166/167 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggataaggaaatcccagacagcaggacctaggctgtacagtgtgactgctgctcacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggataaggaaatcccagacagcaggacctaggctgtacagtgtgactgctgctcacttt 260

                                                                       
Query: 61  gcttctcagctctgtactacagagccgacacaaagtgtggcggctgggaggcattaagct 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gcttctcagctctgtactacagagccgacacaaagtgtgggggctgggaggcattaagct 320

                                                          
Query: 121 tatgacaaggcaggtgcagagaaagcaactgtcatctagagattagc 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgacaaggcaggtgcagagaaagcaactgtcatctagagattagc 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no437_h13.g1 MSMg01no437_h13.g1 CHROMAT_FILE:
MSMg01no437_h13.g1 PHD_FILE: MSMg01no437_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:52 2005
         (189 letters)



>mm_chr7_151917679_151918267
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactatctggctgctgcagggagccacacccagaaggcagggctcaccatagtctcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gactatctggctgctgcagggagccacacccagaaggcagggctcaccatagtctcctat 330

                                                                       
Query: 61  ctttccccagcccagcacccagcattgttcaccattccgcctccatcaggacttggcctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 329 ctttccccagcccagcacccagcattgttcaccattccgcctccatcaggccttggcctt 270

                                                                       
Query: 121 tggtgtcaggcacacgtgacatttttcatgctgtgtaatgaattgctaaatgcctttcca 180
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggtgccaggcacacgtgacagttttcatgctgtgtaatgaattgctaaatgcctttcca 210

                    
Query: 181 accttcagt 189
           |||||||||
Sbjct: 209 accttcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)