BAC Information

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BAC

Clone NameMSMg01-437O01
Chromosome7 (Build37)
Map Location 64,661,937 - 64,662,179
singlet/doubletsinglet
Overlap genenone
Upstream genep, LOC100040839, Gabrg3
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437O01.T7 (MSMg01no437_o01.b1)MSMg01-437O01.TJ (MSMg01no437_o01.g1)
ACCAG528605AG528606
length766765
length of high quality
(start - end)
263 (49 - 311)247 (83 - 329)
definitionCHROMAT_FILE: MSMg01no437_o01.b1 PHD_FILE: MSMg01no437_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:25 2005CHROMAT_FILE: MSMg01no437_o01.g1 PHD_FILE: MSMg01no437_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCC
GCGGAATTCTGCACTTAACCATCTGGTCCTGTGCTTTTTTTGGTTAGGAG
ACTTTTAATGACTGCTTCTATTTCTTTGGGGACTGTTTAATGGACTGCCC
CACCTGGAGATCCATCCCATATACAGCCACAAAAACCAAACAGTATTGTG
TATGCTAGGAAGTGCATGCTGATGGAAGCCTGATATAGTTGTCTCCTGAG
AGGCTTTGCCAGTGCCTGACAAATACAGAGGCTCACACCCAACCATTGGA
CTGAGTGCAGGGGTCCCCATTTTTTTTTATGGACAAGGGACTAAAGAATC
TGAGGGGTTTTGCTTACCCATGCAGTTAGCAACAGTGTCAATATGGTCTG
ACTCCCTGTAGCTCTCATCGACTGCACCTCCAACCTTAGAATACTCATGG
AGGGATCCATGCCTCTGTACTATTTTGTGGCATATTATATCCTTTGCTGT
ATCCCATTGTATCGACAGGCTATTGCCCTTGAGGGCATCGTTCCCTTTCC
CTATTGCTACCGCTCGTCCTCCCTTTTTTTCCCCCCATTCCCACTCTATT
TTTATTTTCTCTTTTCCGCTCTTCTTTCCCTCTTTTTTCCCTCTTTTCTT
CCTCATTCTTTTCTCTCTTTTCCTCTTCTCCCTTTATACCTTCTTTTTCT
TTCTTTCTCTTTTCTCTCTTTTCTACCATCACACCTCACATTATTTTACA
CCCCTCTCATTTTCAT
NCCCTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTGATGTGTTTAGAG
CAATAGATTCTTCACCCAGCCATTGAGTTATTTGAAAGTTTTTAAATACT
AAGGCTGCTGGTGTTTTCCATGTGCAGCTAAGGTGGGCAGGAGGAGAAGG
CAGACAGCCAGAGGAATAGGCACGGAGGAACCTGTAGTGTTCTCGGGAAA
AACACAAGTTGGCAGTTTGGTGGAGCTGAGTGAGACCAGGGTGGCTTGGC
AAAGCTAACCTTTGGGGCTGAGTGAGACTTTTGATGGCAGCAACTGATCT
TAGAACATAGCATAGGTGGGCACTGAGCAAGGAGCAAGCATGGTTTTATA
ACATTACACACAACAAACATGTATAAGAAAACATACTAAGAAAGTGAATT
GGGATATTTGCATGGTACCTACCTTGTCAAAGAAGACCTAATCATCAGCT
TTATTTTCTTGATAGCTATAACTCCTCTGTCATAACTCTAGAGCCCCCCA
TTTAGGATAGAACCTATTTGTTCCCAACTGCTAGATATTATTTATTATTT
ATTCCAATTGTGCGTTTGTGGCCCCATTTGTTCCTACCCTTGACTATTGC
TGTACCACCCGGTACTTTTGCGTGTTAGTTCCGCTACCTTTTTTTCCCAT
CCTTCCTTTATCTTATCTCCCTACTTTCCCCTCAATCCCTCTTTTGCCTC
CCTCCCCTATTCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_o01.g1 MSMg01no437_o01.g1 CHROMAT_FILE:
MSMg01no437_o01.g1 PHD_FILE: MSMg01no437_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:25 2005
         (247 letters)



>mm_chr7_64661734_64662380
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctgatgtgtttagagcaatagattcttcacccagccattgagttatttgaaagtttttaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctgatgtgtttagagcaatagattcttcacccagccattgagttatttgaaagtttttaa 263

                                                                       
Query: 64  atactaaggctgctggtgttttccatgtgcagctaaggtgggcaggaggagaaggcagac 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atattaaggctgctggtgttttccatgtgcagctaaggtgggcaggaggagaaggcagac 323

                                                                       
Query: 124 agccagaggaataggcacggaggaacctgtagtgttctcgggaaaaacacaagttggcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agccagaggaataggcacggaggaacctgtagtgttctcgggaaaaacacaagttggcag 383

                                                                       
Query: 184 tttggtggagctgagtgagaccagggtggcttggcaaagctaacctttggggctgagtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttggtggagctgagtgagaccagggtggcttggcaaagctaacctttggggctgagtga 443

              
Query: 244 gac 246
           |||
Sbjct: 444 gac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)