Query= MSMg01no438_a12.b1 MSMg01no438_a12.b1 CHROMAT_FILE:
MSMg01no438_a12.b1 PHD_FILE: MSMg01no438_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:38 2005
(613 letters)
>mm_chr7_123086656_123087668
Length = 1013
Score = 1071 bits (554), Expect = 0.0
Identities = 596/610 (97%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 2 gaattcaaaggcgatttaccaatgacttctgggtgctgggtgatcctcgtgtataactgt 61
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcaaaggcgatttaccagtgacttctgggtgctgggtgatcctcgtgtataactgt 751
Query: 62 gagtattgatccagtcactacttttctcattatataaagcaaaagtcacagttcacaaac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gagtattgatccagtcactacttttctcattatataaagcaaaagtcacagttcacaaac 691
Query: 122 aaatcaacccatatgtaaattctggttagctttttagtaactgtttagtaaatattatta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aaatcaacccatatgtaaattctggttagctttttagtaactgtttagtaaatattatta 631
Query: 182 gttctacataagtgattcttttggaattagggt-atagcagacaatgttggctgttgtaa 240
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 630 gttctacataagtgattcttttggaattagggtaat-gcagacaatgttggctgttgtaa 572
Query: 241 agcctgcttgctgtgactcctggtacagccgcacattgtttgtctaccaccataggccta 300
||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 571 agcctgcttgctgtgactcctggtacagcagcacattgcaggcctaccaccataggccta 512
Query: 301 aacaataaccttatttcaggaaataacctcactgtaggaacaggccaccttaaaaattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aacaataaccttatttcaggaaataacctcactgtaggaacaggccaccttaaaaattct 452
Query: 361 cctgtatccacagatgcctgtttaccctgataactttgtacatcttcgtgtctatgctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cctgtatccacagatgcctgtttaccctgataactttgtacatcttcgtgtctatgctga 392
Query: 421 gaagatacaagatagcgtagaattcaaagagcagtctgtgcagggagattgatgctaagg 480
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 391 gaagatacaagatagcgtagatttcaaagagcggtttgtgcagggagattgatgctaagg 332
Query: 481 agccagattcattggtgaatatagaatggacaccgaaatggtggtgttctcccttttccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 331 agccagattcattggtgaatatagaatggacaccgaaatggtggtgttctccctttttcc 272
Query: 541 cctcccccaagtatcttttatactttcaaccatattttggagaaaaaaacccctattttc 600
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 271 cctcccccaagtatcttttatactttcaaccttattttggagaaaaaaaaccctattttc 212
Query: 601 tcaagaaaaa 610
||||||||||
Sbjct: 211 tcaagaaaaa 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_a12.g1 MSMg01no438_a12.g1 CHROMAT_FILE:
MSMg01no438_a12.g1 PHD_FILE: MSMg01no438_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:38 2005
(473 letters)
>mm_chr7_122868236_122869110
Length = 875
Score = 851 bits (440), Expect = 0.0
Identities = 470/490 (95%), Gaps = 17/490 (3%)
Strand = Plus / Plus
Query: 1 tttcctctagtcacaaggactagggagccaacagaaggtcagagccagaagctggaaaca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 186 tttcctctagtcacaaggactagggagccaacagaaggtcagagtcagaagctggaaaca 245
Query: 61 ctaaatttcccttccaaataattgtgccaattttcattcacctaaaaaaaaa-------- 112
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 246 ctaaatttcccttccaaataattgtgccaattttcattcaccaaaaaaaaaaaaaaaaaa 305
Query: 113 -------gtgcccctttcttcatttttcttcattggcttacaaaaaaaa--gttaaaaag 163
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 aaaaaaagtgcccctttcttcatttttcttcattggcttacaaaaaaaaaagttaaaaag 365
Query: 164 tggtcacaggtttaactttcagtaactttatatactagactagtacccacttcatttctg 223
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 tggtcacaggtttaactttcagtaactttatatactagagtagtacccacttcatttctg 425
Query: 224 gatatggtagacactgaagttactctgcttcctaaattatgttcaaaaggaaaacaagcc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gatatggtagacactgaagttactctgcttcctaaattatgttcaaaaggaaaacaagcc 485
Query: 284 ttttgaataatatttcacagatatctggtgacagagacagtattccctaggagatggaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttttgaataatatttcacagatatctggtgacagagacagtattccctaggagatggaag 545
Query: 344 gaaaataagtaagtcctaagttggtctagcttactacctgacccagagggaaagagtcca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaaataagtaagtcctaagttggtctagcttactacctgacccagagggaaagagtcca 605
Query: 404 ggtgaaggctgcctacattcctgaaaagaaatagtattgcagagtcctgggctctgggct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggtgaaggctgcctacattcctgaaaagaaatagtattgcagagtcctgggctctgggct 665
Query: 464 ggctggaaga 473
||||||||||
Sbjct: 666 ggctggaaga 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 875
Length adjustment: 10
Effective length of query: 463
Effective length of database: 865
Effective search space: 400495
Effective search space used: 400495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
