Query= MSMg01no438_l11.b1 MSMg01no438_l11.b1 CHROMAT_FILE:
MSMg01no438_l11.b1 PHD_FILE: MSMg01no438_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:36 2005
(523 letters)
>mm_chr7_134238926_134239849
Length = 924
Score = 924 bits (478), Expect = 0.0
Identities = 511/522 (97%), Gaps = 2/522 (0%)
Strand = Plus / Plus
Query: 4 ggaattctaagtcaaatctcagcttgtatgttgagacagacattccttacttaagctttg 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagtcaaagctaagcttgtatgttgagacagacattccttacttaagctttg 263
Query: 64 taattaggggctgtgggctcagctttgtcaggactggatcagagggagactactaagatc 123
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 taattaggggctgtgagctcagctttgtcaggactggatcagagggagactactaagacc 323
Query: 124 aagattgagggcactctaatttggatttttttttttttt-gagaaaaactacatttattc 182
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 aagcttgagggcactctaatttggatttttttttttttttgagaaaaactacatttattc 383
Query: 183 tcctagacctatgaaggccataggtgtgagaacaggggttgctgaattttccaggcagtc 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tcctagacctatgaaggccataggtgtgagaacaggggttgctgaatttttcaggcagtc 443
Query: 243 ccccaaacaagcccaaaccggcagggttgacagaaaatgtcttctgcttttgaaagtttt 302
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 444 ccccaaacaagcccaaaccggcagggttgacagaaaacgttttctgcttttgaaagtttt 503
Query: 303 tgtttttagtacttcccaagtgacttagttatggcttctattgctatgatgaaacaccgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtttttagtacttcccaagtgacttagttatggcttctattgctatgatgaaacaccgt 563
Query: 363 gaccaaaagcaactttggaaggaactggtgtatttcagcttacaaccc-cagtccaccct 421
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 gaccaaaagcaactttggaaggaactggtgtatttcagcttacaacccgcagtccaccct 623
Query: 422 ccacggaagtcaggccaggaactcacaggcagcagccacagtgcccggatccatgaacgg 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 ccacggaagtcaggccaggaactcacaggcagcagacacagtgcccggatccatgaacgg 683
Query: 482 agcagaggccatggaggcatgctgcttactgccttgctcctc 523
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcagaggccatggaggcatgctgcttactgccttgctcctc 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_l11.g1 MSMg01no438_l11.g1 CHROMAT_FILE:
MSMg01no438_l11.g1 PHD_FILE: MSMg01no438_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:36 2005
(544 letters)
>mm_chr7_134379999_134380943
Length = 945
Score = 1000 bits (517), Expect = 0.0
Identities = 538/549 (97%), Gaps = 10/549 (1%)
Strand = Plus / Minus
Query: 1 agatctgcctgcctttgcctcctgagtgcaggaactaaaggctggacacagctgtgtcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 agatctgcctgcctttgcctcctgagtgcaggaactaaaggctggacacagctgtgtcca 867
Query: 61 gttgaggggcgtgttaacaggaggcagtaggattttaaaactgggtccagcttttacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gttgaggggcgtgttaacaggaggcagtaggattttaaaactgggtccagcttttacaac 807
Query: 121 tattgggggcctaatctgtgctaggcagtgttctagaagctgcgatacagctcacactg- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tattgggggcctaatctgtgctaggcagtgttctagaagctgcgatacagctcacactgg 747
Query: 180 -tttaaggtcccagcgcctaaccaagacagtttcctgagcatgaaggttatgtagtctct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 c---aaggtcccagcgcctaaccaagacagtttcctgagcatgaaggttatgtagtctct 690
Query: 239 aatctgtttcttt---tattctcatcctcctcttccctcccaccgtttcccaggctcttc 295
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aatctgtttc--tagctattctcatcctcctcttccctcccaccgtttcccaggctcttc 632
Query: 296 tctgccttcacctgcagacaccctccctccggtaccctgggcttccaccctccctagaat 355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 631 tctgccttcacctgcagacaccctccctccggtaccctgggcttctaccctccctagaat 572
Query: 356 tcccatcactccagtccagctggtgactcctccttaaggggccttggcggaccatccccc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcccatcactccagtccagctggtgactcctccttaaggggccttggcggaccatccccc 512
Query: 416 accccaaagggctttaaggccagatgcccacgctggtgctttattcgagcagagctgtca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 accccaaagggctttaaggccagatgcccacgctggtgctttattcgagcagagctgtca 452
Query: 476 ccaaagcccttaccacattctgcacatttgtatggcttctccccggtatgtgtacgcctg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccaaagcccttaccacattctgcacatttgtatggcttctccccggtatgtgtacgcctg 392
Query: 536 tgtttgact 544
|||||||||
Sbjct: 391 tgtttgact 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
