Query= MSMg01no438_m17.b1 MSMg01no438_m17.b1 CHROMAT_FILE:
MSMg01no438_m17.b1 PHD_FILE: MSMg01no438_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:42 2005
(539 letters)
>mm_chr7_71917331_71918269
Length = 939
Score = 920 bits (476), Expect = 0.0
Identities = 505/524 (96%), Gaps = 16/524 (3%)
Strand = Plus / Minus
Query: 32 cttgggttttccaaagagagggctttgtggacagatcatgattccatggacccttccctg 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cttgggttttccaaagagagggctttgtggacagatcatgattccatggacccttccctg 880
Query: 92 tggacactgacagggcggggctctgctctgtcagagcttctgcttgccagcaggacttgt 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tggacactgacagggcggggctctgctctgtcagagcttctgcttgccagcaggacttgt 820
Query: 152 aattccctgagtgcaggtgtaggcggtcacttcagactttgagtgggacatttagtga-c 210
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 819 aattccctgagtgcaggtgtaggtggtcacttcagactttgagtgggacatttagtgagc 760
Query: 211 ccccc---------------cacactacacactacacactagaagcgtattgtttcatgt 255
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cccccacacactacacactacacactacacactacacactagaagcgtattgtttcatgt 700
Query: 256 tttatcatcaattttctctttccctgaagaacacagtaagcttcaggttaataagtggtt 315
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 699 tttatcatcaattttctctttccctgaagaacacagcaagcttcaggttaataagtggtt 640
Query: 316 ctgagatcaatatgacactctcaaggcactgaaaacttctctcttccttgatttctctca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctgagatcaatatgacactctcaaggcactgaaaacttctctcttccttgatttctctca 580
Query: 376 gagaacgtgggtaaaaagggctgaaggtcaaagccgtgtcatgttagcttatgttagctc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gagaacgtgggtaaaaagggctgaaggtcaaagccgtgtcatgttagcttatgttagctc 520
Query: 436 agaaacctgccaccttcggcgggtactgacacaaactcaatctgctatggagcaggccag 495
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 519 agaaacctgccaccttcggcgggtactgacacaaactcaatctgctgtggagcaggccag 460
Query: 496 gtaagtgtgtagcatgtcccatggccccctctccagaccacctg 539
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtaagtgtgtagcatgtcccatggccccctctccagaccacctg 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_m17.g1 MSMg01no438_m17.g1 CHROMAT_FILE:
MSMg01no438_m17.g1 PHD_FILE: MSMg01no438_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:42 2005
(481 letters)
>mm_chr7_71801330_71802211
Length = 882
Score = 861 bits (445), Expect = 0.0
Identities = 473/483 (97%), Gaps = 3/483 (0%)
Strand = Plus / Plus
Query: 1 atcattggggcccatcctaatatgactgtgtttataatacatcaccataaggcctacctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 atcattggggcccatcctaatatgactgtgtttataatacatcaccataaggcccacctc 260
Query: 61 tgaccacccttagaggaagtggtttctgtctccatagctcagtgactgtagtcaattgga 120
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 261 tgaccacccttagaggaagtggtttctgtct-catagctcagtgacagtagtcaattgga 319
Query: 121 ttgtttctttcccctggaaactttattgtgggggttaaatttcaacacttgagactatgg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgtttcttccccctggaaactttattgtgggggttaaatttcaacacttgagactatgg 379
Query: 181 gggaatacacaccttatccaaggcttaacaacaaacaggcaaggacagagtccccgagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggaatacacaccttatccaaggcttaacaacaaacaggcaaggacagagtccccgagtc 439
Query: 241 tttgtgatgtttgctcctcagggagagctaccccatcagtctccttg--agctctgtctc 298
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct: 440 tttgtgatgtttgctcctcagggagagctaccccatcagtctcctcgggagctctgcctc 499
Query: 299 atttccgttaactgcagcagaggtttccccgagccgccttactaggtaccatgtaatgaa 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 atttccgttaactgcagcagaggtttccccaagccgccttactaggtaccatgtaatgaa 559
Query: 359 tgccttcctgctaatgaacatttagattgtttcctgatggttgctcgcaccaacaggatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgccttcctgctaatgaacatttagattgtttcctgatggttgctcgcaccaacaggatg 619
Query: 419 cttgtgggctaatggttctctcaaggaaacagcaaggaagtggaatggctggatcctctg 478
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttgtgggctaatggttctctcgaggaaacagcaaggaagtggaatggctggatcctctg 679
Query: 479 cct 481
|||
Sbjct: 680 cct 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
