Query= MSMg01no439_a05.b1 MSMg01no439_a05.b1 CHROMAT_FILE:
MSMg01no439_a05.b1 PHD_FILE: MSMg01no439_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:00 2005
(628 letters)
>mm_chr7_137596361_137597389
Length = 1029
Score = 861 bits (445), Expect = 0.0
Identities = 454/457 (99%), Gaps = 1/457 (0%)
Strand = Plus / Minus
Query: 4 ggaattccc-aatatcacctttgtcttctgaccttattctagttcagcctggttttgtac 62
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaattcccaaagattacctttgtcttctgaccttattctagttcagcctggttttgtac 398
Query: 63 tttatgtatatggaagtatatataatattttaattggcttttacccagacattgtatctg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttatgtatatggaagtatatataatattttaattggcttttacccagacattgtatctg 338
Query: 123 ttagatttagccatctgtttgtatgtagtggtaggctgtctattgatgactagagtattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttagatttagccatctgtttgtatgtagtggtaggctgtctattgatgactagagtattg 278
Query: 183 tatttaatgaatatattgcatttcatgtcagcctgaaaagtcaccctggggtttcaagag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatttaatgaatatattgcatttcatgtcagcctgaaaagtcaccctggggtttcaagag 218
Query: 243 ctggggtcaagggagtggggtcccacacagaatctcaaaggggccaggttaaaatggtag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ctggggtcaagggagtggggtcccacacagaatctcaaaggggccaggttaaaatggtag 158
Query: 303 gggagtgttctgggctcagtgcaggaccaggggaaggagcactagcccgtcagcaccagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gggagtgttctgggctcagtgcaggaccaggggaaggagcactagcccgtcagcaccagt 98
Query: 363 ctccaaggacaatttagttaaggtctcttttagggttctgctcattctctctaccttcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ctccaaggacaatttagttaaggtctcttttagggttctgctcattctctctaccttcct 38
Query: 423 gagctctgggcacagtatgcacagtattcacagagca 459
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 gagctctgggcacagtatgcacagtattcacagagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_a05.g1 MSMg01no439_a05.g1 CHROMAT_FILE:
MSMg01no439_a05.g1 PHD_FILE: MSMg01no439_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:00 2005
(560 letters)
>mm_chr7_137428734_137429693
Length = 960
Score = 984 bits (509), Expect = 0.0
Identities = 556/593 (93%), Gaps = 33/593 (5%)
Strand = Plus / Plus
Query: 1 cagggattgaagacagtagacctaacctgcataccttgacccacatgaccgctgcagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggattgaagacagtagacctaacctgcataccttgacccacatgaccgctgcagtag 260
Query: 61 aactccaggctaactggctcagcatccaggtgcctccagaaactgtataaaataaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactccaggctaactggctcagcatccaggtgcctccagaaactgtataaaataaataaa 320
Query: 121 ttagcacacagctttaatccctctggctagaatacggacaagtccttattactcacctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcacacagctttaatccctctggctagaatacggacaagtccttattactcacctgc 380
Query: 181 aatcccaaacaatgaaggtaaagttagtttgtagaaggaagcagccatgtttgaaagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcccaaacaatgaaggtaaagttagtttgtagaaggaagcagccatgtttgaaagtga 440
Query: 241 tgtctaattgagtggcagaaaaagggacgaatcaaagaaagatttgacagaatagggtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctaattgagtggcagaaaaagggacgaatcaaagaaagatttgacagaatagggtac 500
Query: 301 gcccaactctcaagagaaaagagaggagggggaaactactcaagggagagacagacagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccaactctcaagagaaaagagaggagggggaaactactcaagggagagacagacagta 560
Query: 361 caggaggaagagggtacagtacaggaatacagtagaca---------------------- 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaggaagagggtacagtacaggaatacagtagacaaacagtacaaacagtacaggga 620
Query: 399 -----------cacagtacaaacagtacagggatacagtagaggtcctggagaacagggc 447
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacagtagacacacagtacaaacagtacagggatacagtagaggtcctggagaacagggc 680
Query: 448 agtagagttgagagggagaggagagcagcacagagagaaagaaggaggcagtgttaccag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtagagttgagagggagaggagagcagcacagagagaaagaaggaggcagtgttaccag 740
Query: 508 gagagttttacagagacggattggtgagagagcaagttagacacgggtaaaga 560
||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 741 gagagttttacagagacagattggggagagagcaagctagacacaggtaaaga 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
