BAC Information

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BAC

Clone NameMSMg01-439K02
Chromosome7 (Build37)
Map Location 122,159,666 - 122,159,905
singlet/doubletsinglet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439K02.T7 (MSMg01no439_k02.b1)MSMg01-439K02.TJ (MSMg01no439_k02.g1)
ACCAG529938AG529939
length758752
length of high quality
(start - end)
242 (76 - 317)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no439_k02.b1 PHD_FILE: MSMg01no439_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:48 2005CHROMAT_FILE: MSMg01no439_k02.g1 PHD_FILE: MSMg01no439_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGAACAGCCGCGGAA
TTCAGNACTTTTTCAAAGAACATCACCACACACAGAAAGGCCCAACACCC
ACATCATCTTACTGTTTGCTTTTGCTAGTCCCATAAGGAAGCTGTTGACC
CTTTGGGTTGTAATGAAAGACACAGAAGCTAATCAACTCTAAGTTTTAAT
TCTAAAATCCTAAGGCTTTCTGATACACTGCAGAAAAGTGGGAGAATTCA
TCATAAGGAGACATTCTTAGTGATACTGGAACATACAAAATATGGCAGCA
CACAGGNGCTGGATACCCTTTATCTTTTTGGAGCATGTCACATAGGAGTT
TCCATTGGGAGACTCTGATAGAACAACAGGACAGAATAGTTTCACTGTGG
GGAGCATTCCCTATCCTGAAGCCATCATTAACCAGGAACTCTCTAGTATC
TCCTAAGACCTATAGATCCAAGGGGGCTTCAACAAAGAGAAGTTTTTCAA
AGCCGGGAAAGAAGGCTTTCATTATTAACAACCCCTGGGAGGTTCTTCCC
CCCCGGACCCCAGATTTACTTCCCAATTTTTCTCCCCCGGGCGGTTTCTA
ATCCCCTTATTTTTGGGGGGTGTTCCCGGCCGTTTTCACAGTGGGGTTCT
CTCTCGGGGCCCTTCTTATGTGGAAAATTAATATTTTTTTGTTGTGAGAC
ACACTACCACCTTCTAGGGGTGTTGATTCTTCACCTCGCCTTCTTCCTCC
CCCAATCG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTT
ATTGAGGATTTTTGTTTTTATATTCATAAGAGAAATTGGCCTGAAGCTCT
CTATCTTTGTTGCGTCTTTCTGTGGCTTAGGTATCACAGTAATAGTGCCT
TCATATAATGAGTTGCCCAGAGTACCTTCTACTTCTATTTTGTGACACAC
CCCGTGCACACCTGTTCCCACCATCTTCTTTGATCCTTTGTCACATTCTT
GTATTATTCCTATTCTGTTTCTGCCTTCCCCTCTTGCCGTGTTCACCCTT
ATCCCTTTGCCTCCACCTTTCCCTATTTCATATTGCCCCCTGCTTATCAT
GCCTCCCCCTTTTTTCCCGATTTCCCCTTTTTTTTTCTCCTTCTTTTCCC
CCTTATCTTTTTTTTTCCCACTCTCCTTTTTCCTCTCTCTTCTCTCTCTC
CTTTTTTCTTTCCCCCTCCTTTTTTCCACCTTTGTCCTATTTCTACGTTA
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_k02.b1 MSMg01no439_k02.b1 CHROMAT_FILE:
MSMg01no439_k02.b1 PHD_FILE: MSMg01no439_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:48 2005
         (242 letters)



>mm_chr7_122159466_122160105
          Length = 640

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacacacagaaaggcccaacacccacatcatcttactgtttgcttttgctagtcccata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 ccacacacagaaaggcccaacacccacatcatcttactgtttgcttttgctagttccata 381

                                                                       
Query: 61  aggaagctgttgaccctttgggttgtaatgaaagacacagaagctaatcaactctaagtt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 aggaagctgttgaccctttgggttgtaatgaaagatacagaagctaatcaactctaagtt 321

                                                                       
Query: 121 ttaattctaaaatcctaaggctttctgatacactgcagaaaagtgggagaattcatcata 180
           ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |
Sbjct: 320 ttaattctaaaatcctaaggctttctgctacaatgcagaaa-gtgggagaattcatcaaa 262

                                                                       
Query: 181 aggagacattcttagtgatactggaacatacaaaatatggcagcacacaggngctggata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aggagacattcttagtgatactggaacatacaaaatatggcagcacacagg-gctggata 203

             
Query: 241 cc 242
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 640
Length adjustment: 9
Effective length of query: 233
Effective length of database: 631
Effective search space:   147023
Effective search space used:   147023
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)