BAC Information

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BAC

Clone NameMSMg01-439N24
Chromosome7 (Build37)
Map Location 136,481,866 - 136,482,133
singlet/doubletsinglet
Overlap genePpapdc1a
Upstream geneEG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
Downstream geneBrwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439N24.T7 (MSMg01no439_n24.b1)MSMg01-439N24.TJ (MSMg01no439_n24.g1)
ACCAG530124AG530125
length772756
length of high quality
(start - end)
372 (48 - 419)268 (77 - 344)
definitionCHROMAT_FILE: MSMg01no439_n24.b1 PHD_FILE: MSMg01no439_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:07 2005CHROMAT_FILE: MSMg01no439_n24.g1 PHD_FILE: MSMg01no439_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTGTTCGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTATCACAAGGAGATAAGTATGGATTGATTCG
CATTGTTCTACTTGATAACAACCAGTTGTGCTCACACCAATTGGTGAAAA
AGCTGTCTTTCTTCCCCTGGAGGGTTTTACTTCCCTTGGCCAAAAACAAT
TGACCATATGTGGGTGGTTCCCTTTTTCTTTGCCCCTCATTCTTTTCCTT
TTGGCCACCTTGGTCCGTGTCTTTACAAATATTCCTGTCCTTTTCTTTTC
CATTTGCCCCCCTCTTAACCCTTCTTTCTCCCTTTTGGCGCTTCTTTATA
TATTCCCCCCCCCCTCCCTTATTTTTTTTCCCACCTTTTGTTTTTTTTTT
CCCCTCTCTCTCCCTCTTTTCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATTTGTATTTTTCAACTTTAT
TTCCATATGGCTCTCTTTTACATTTGTTTCCTTGTTGACATTTTCAATTT
ATCGTGGCATTGTCATTTGGCTTGGTTATTTGGGCTCACAATGAGGCATA
ATGAGACTCATGACAGGAGGCACATGGTAGAGACAAGCTGCTTACCTGAT
TTGGGAGGTGGTGATGGTGGAATGGAGTCATCTGGNCTAACCCCCAGCAG
CCTCTATCACCTCCTGATTTTTCTACCATTGCTTTCCTAGTTCAGATTCT
CTAGAGGTCTGCATGCATGTGCGCATGTCTGTGCATGTACCTGCGCGTTT
GCGCGCATGCTTATACAGCGCCCCCTATACACCCCTTACCTTTGACTTAC
GCCGACCCACACTGACGCGCCTTCTACTTATTCCGACCGCTCCATTTCTC
CCGTCTATTGGTCCGTGCCGCCTCTATGTCCCACTACACTCTCCGCCTCC
CCCCCCCTTTCTTCTTCTTTTTTTCCTTTCCTGATCCCTTTTTCCCCTTT
TTTCCCCCTCCCCTTTCTCCACCCCCCACTTTCGCGGTCCTCTTATCGCT
TTCCCTGTCTTTCCTCCCACCAACTCTCATCCCCCTTTCTGTTTCTTCTT
CATTCCCCCCCCCCCCCTTCTTCTCTCCTCTTTCCTTTTATCTCCCCATC
TTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_n24.g1 MSMg01no439_n24.g1 CHROMAT_FILE:
MSMg01no439_n24.g1 PHD_FILE: MSMg01no439_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:07 2005
         (268 letters)



>mm_chr7_136481666_136482333
          Length = 668

 Score =  408 bits (211), Expect = e-118
 Identities = 254/270 (94%), Gaps = 4/270 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatttgtatttttcaactttatttccatatggctctcttttacatttgtttccttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatttgtatttttcaactttatttccatatggctctcttttacatttgtttccttgtt 260

                                                                       
Query: 61  gacattttcaatttat--cgtggcattgtcatttggcttggttatttgggctcacaatga 118
           ||||||| ||| ||||  |   |||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gacatttccaaattattac--agcattgtcatttggcttgattatttgggctcacaatga 318

                                                                       
Query: 119 ggcataatgagactcatgacaggaggcacatggtagagacaagctgcttacctgatttgg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggcataatgagactcatgacaggaggcacatggtagagacaagctgcttacctgatttgg 378

                                                                       
Query: 179 gaggtggtgatggtggaatggagtcatctggnctaacccccagcagcctctatcacctcc 238
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 379 gaggtggtgatggtggaatggagtcatctgggcaaacccccagcagcctctatcacctcc 438

                                         
Query: 239 tgatttttctaccattgctttcctagttca 268
           |||   ||| |||| || ||||||||||||
Sbjct: 439 tgaaacttccaccactgatttcctagttca 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)