BAC Information

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BAC

Clone NameMSMg01-441C23
Chromosome7 (Build37)
Map Location 76,151,591 - 76,152,137
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C23.T7 (MSMg01no441_c23.b1)MSMg01-441C23.TJ (MSMg01no441_c23.g1)
ACCAG531126AG531127
length783864
length of high quality
(start - end)		556 (45 - 600)41 (73 - 113)
definitionCHROMAT_FILE: MSMg01no441_c23.b1 PHD_FILE: MSMg01no441_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:52 2005CHROMAT_FILE: MSMg01no441_c23.g1 PHD_FILE: MSMg01no441_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTATATGTTACCGAGGGTCACATGCATTTAATTATTTTATTATT
CTTCAATGTTGTACACCCAGTGCACCCCACTCACCCTGGAGATGAAATTT
CCAGCGGCTCATCCTAGATATGCTTTTCTTTCTTGGTTGATTTTCCCGTT
ATTGTTCTTAGCCTGCTGCTCTTGTCTATGTATTCCGGGGGTAAAAGGTT
AGTGAGAAGATTTAGAAATGGATTGGAAATGGACTTAGAGATTAAAAAAA
AAAAACAATTAAATGGACTCTGAATAAAGCTGTTGAGTGGTGGAGAGCAT
GCTCCTCCTACGGATTGCAGCAGATCTGAGATGTATGGAAAGTCAGGATT
TCCATACTGTTCTGCAGTGTCTATGGAGAAGTCTAAACTCATCAACTTCT
CTTTCTTCATCTCTACATGGCCAGCACTGAGTAAAGACCCAAGTCAAATG
GCTGCGATGCTCGCCGAATATTACCTTTGTCCAGCACCTTCAGTTCTTAC
AACAGAGCTTCACCTACACACTCAAGCGTTTCTCAGTGGAATCAGTTTGA
AGAGCCTCTTGGTTCTATTCTGTTCTTTAAAGAGGTTCCTTTGACAAATT
GAAAGTTCTATCAAGCATTATTTCCCGTATAGCGTGCGCTGAAATGGTAC
TGAAAATGGGAAAGATTTCTAATCCATCTGTAACGGGAACTTGGTTGGAG
GTGTCTAAGGAAAGGTTTCTCCCGCCTCACTAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTCCAAGCTGGTCTTTGGCAGATAGC
AGATAGATACATACATACATACCCCCATCACATCACATACATACATACAC
CCATACATACGTACATACATACACAGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCNCCTCCCC
CCCCCCCCCCCCTNCCTTTTTCCCCCCCCCCTCCCCCCCCCCCCCCCCTT
CCCCCCCCTCCCCCCCCCCCCCCCCCCCCCTTCTNTCCCCCCCCCCCTCC
CCCCCCCCCTTCCCCNTCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTTTCCCCCCCCCCCCCCCCCCCCTTTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCCTTTCCCCCCC
CCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCTTCCCTCC
TCTCCCCCCCCCTTTCCCCTCCCCCTCCCATCCCCCCCCCCCCCCCCCCC
CCCCCCTCTCCCCCCCTCCCCCCCCCCCCCCCCCCTCCCTCCCTCCCCCC
CCCCTTCTACCCCCCCCCCCCCCCCCCTCCCTCCCCCCCCCCCCCTCTCT
CCTCCCCCCCCCCCTCCCCCCCCCCCTCCCTCCCTCCCCCCCCCCCCCCC
CCTTCCTCCTCCCCCCCCCCCCCCCTGCCCTCCCCCTCTCCCCTCCCTCC
CCTCCGTCTCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCTCCCCCCCCC
CCCCCCCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c23.b1 MSMg01no441_c23.b1 CHROMAT_FILE:
MSMg01no441_c23.b1 PHD_FILE: MSMg01no441_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:52 2005
         (556 letters)



>mm_chr7_76151387_76152337
          Length = 951

 Score =  994 bits (514), Expect = 0.0
 Identities = 541/552 (98%), Gaps = 5/552 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtatatgttaccgagggtcacatgcatttaattattttattattcttcaatg 64
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtatatg-gaaggagggtcacatgcatttaattattttattattcttcaatg 263

                                                                       
Query: 65  ttgtacacccagtgcaccccactcaccctggagatgaaatttccagcggctcatcctaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtacacccagtgcaccccactcaccctggagatgaaatttccagcggctcatcctaga 323

                                                                       
Query: 125 tatgcttttctttcttggttgattttcccgttattgttcttagcctgctgctcttgtcta 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgcttttctttcttggctgattttcccgttattgttcttagcctgctgctcttgtcta 383

                                                                       
Query: 185 tgtattccgggggtaaaaggttagtgagaagatttagaaatggattggaaatggacttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtattccgggggtaaaaggttagtgagaagatttagaaatggattggaaatggacttag 443

                                                                       
Query: 245 agattaaaaaaaaaaaacaattaaatggactctgaataaagctgttgagtggtggagagc 304
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agattaaaaaaaaa----aattaaatggactctgaataaagctgttgagtggtggagagc 499

                                                                       
Query: 305 atgctcctcctacggattgcagcagatctgagatgtatggaaagtcaggatttccatact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgctcctcctacggattgcagcagatctgagatgtatggaaagtcaggatttccatact 559

                                                                       
Query: 365 gttctgcagtgtctatggagaagtctaaactcatcaacttctctttcttcatctctacat 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtctgcagtgtctatggagaagtctaaactcatcaacttctctttcttcatctctacat 619

                                                                       
Query: 425 ggccagcactgagtaaagacccaagtcaaatggctgcgatgctcgccgaatattaccttt 484
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 ggccagcactgagtaaagacccaagtcaaatggctgcgttgctcgccgaatattaccttt 679

                                                                       
Query: 485 gtccagcaccttcagttcttacaacagagcttcacctacacactcaagcgtttctcagtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtccagcaccttcagttcttacaacagagcttcacctacacactcaagcgtttctcagtg 739

                       
Query: 545 gaatcagtttga 556
           ||||||||||||
Sbjct: 740 gaatcagtttga 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 951
Length adjustment: 10
Effective length of query: 546
Effective length of database: 941
Effective search space:   513786
Effective search space used:   513786
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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