BAC Information

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BAC

Clone NameMSMg01-441P03
Chromosome7 (Build37)
Map Location 16,518,012 - 16,518,449
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1
Downstream geneGltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441P03.T7 (MSMg01no441_p03.b1)MSMg01-441P03.TJ (MSMg01no441_p03.g1)
ACCAG531709AG531710
length779764
length of high quality
(start - end)
455 (50 - 504)525 (80 - 604)
definitionCHROMAT_FILE: MSMg01no441_p03.b1 PHD_FILE: MSMg01no441_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:55 2005CHROMAT_FILE: MSMg01no441_p03.g1 PHD_FILE: MSMg01no441_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAATCTCTCGCTAAGAGCTGCTACAAACAAAACCACAAACA
CCCCTGGAGGAAAATAGTCTGAAGAATTGAGACAGCTGTGTAGAAATACA
GCGGATTGTAGTCACAGGAAGAAATTCTTGGTCCTGGTTGCTCCAGAGAT
CTTATTGCCTATGGCTCCTGAGTGCTGAGACTGAAAGTATATGCCACCAT
GCCCAGTCAGAAACAATTCTTGACTTCTTTGGCAACTAAAAAAGGAAGAT
TTATAATGGCTACCTTCTGAAGAGACATGTAGCATAGCTTACTACCCTCA
TGAAAAGAGTCAATGTAGACTATAGGGAGAATGAGTTAGCTGACTTCTAG
AGTCCCAGCTAGAACATAGGGCCTGGGAGTGTGGCTCAGTGGTAGAGCAC
TTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAG
CCTCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTA
GATCCAGCTGCTGGGAATTGAACATGTTTTTTGGAACAGCACATTCTCTG
AGCCATTATCCCATCCTTGAAGAATTTGTTTTTGGCCCATAGGTTTAAAG
GCTCAGCTCAGCCCTCCTGGTGGGGAGGGGTAATCTTGAAAAAAAAAAGT
TCTGGCCAGGGGGCCCCCAACCCCCCCAAAATGAACATTGGGATAAAAGG
TTGGGAAAGCCTTCGTGGCATAATACTTT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGAGTGGAACACAGCGCC
TGCCCCAATCCAATCGCGCGGAACTTGAGACTGCGGTACATAGGGAAGCA
GGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTCCACTCCACTCGAGC
CCCGGGCTACCTTGCCAGCTGAGTCGCCTGACACCCGCAAGGGCCCACAC
AGGATTCCACACGTGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCT
GCCAGGAGTCTGGTTCGAACACCAGTTATCTGGGTACCTGCCTTGCAAGA
AGAGAGCTTGCCTGCAGAGAATACTCTGCCCACTGAAACTAAGGAGAGTG
CTACCCTCCAGGTCTGCTCATAGAGGCTAACAGAGTCACCTGAAGAACAA
GCTCTTAACAGTGACAACTAAAACAGCTAGCTTCAGAGATTACCAGATGG
CGAAAGGCAAACGTAAGAATCCTACTAACAGAAATCAAGACCACTAACCA
TCATCAGAACGCAGCACTCCCACCCCACCTAGTCCTGGGCACCCCAACAC
AACCGAAAATCTAGACCCAGATTTAAAAACATTTCTCATGATGATGATAG
AGGACATCAAGAAGGACTTTCATAAGTCACTTAAAGAATTACAGGAGAGC
ACTGCTAAAGAGTTACAGGCCCTGAAAGAAAACCGGGAAAACCAGTCCAA
CAGGGAGAAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_p03.b1 MSMg01no441_p03.b1 CHROMAT_FILE:
MSMg01no441_p03.b1 PHD_FILE: MSMg01no441_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:55 2005
         (455 letters)



>mm_chr7_16517713_16518567
          Length = 855

 Score =  789 bits (408), Expect = 0.0
 Identities = 430/438 (98%), Gaps = 3/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  cgctaagagctgctacaaacaaaaccacaaacacccctggaggaaaatagtctgaagaat 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cgctaagagctgctacaaacaaaaccacaaacacccctggaggaaaatagtctgaagaat 678

                                                                       
Query: 79  tgagacagctgtgtagaaatacagcggattgtagtcacaggaagaaattcttggtcctgg 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgagacagctgtgtagaaatacagcggattgtagtcacaggaagaaattcttggtcctgg 618

                                                                       
Query: 139 ttgctccagagatcttattgcctatggctcctgagtgctgagactgaaagtatatgccac 198
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 ttgctccagagatcttattgcctatggctcctgagtgctgagactgaaggtatatgccac 558

                                                                       
Query: 199 catgcccagtcagaaacaattcttgacttctttggcaactaaaaaaggaagatttataat 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catgcccagtcagaaacaattcttgacttctttggcaactaaaaaaggaagatttataat 498

                                                                       
Query: 259 ggctaccttctgaagagacatgtagcatagcttactaccctcatgaaaagagtcaatgta 318
           |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct: 497 ggctaccttctgaagagacatgtagcgtagcttactaaccttatgaaaagagtcaatgta 438

                                                                       
Query: 319 gactatagggagaatgagttagctgacttctagagtcccagctagaacatagggcctggg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gactatagggagaatgagttagctgacttctagagtcccagctagaacatagggcctggg 378

                                                                       
Query: 379 agtgtggctcagtggtagagcacttgcctagaatcccccagtgaggggctgggg-gcg-- 435
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  
Sbjct: 377 agtgtggctcagtggtagagcacttgcctagaatcccccagtgaggggctggggtgtgga 318

                             
Query: 436 tggctcagtggtagagcc 453
           ||||||||||||||||||
Sbjct: 317 tggctcagtggtagagcc 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)