BAC Information

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BAC

Clone NameMSMg01-443N24
Chromosome7 (Build37)
Map Location 85,317,561 - 85,456,188
singlet/doubletdoublet
Overlap geneA330068G13Rik, Ntrk3
Upstream genenone
Downstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443N24.T7 (MSMg01no443_n24.b1)MSMg01-443N24.TJ (MSMg01no443_n24.g1)
ACCAG533177AG533178
length780794
length of high quality
(start - end)
249 (71 - 319)375 (77 - 451)
definitionCHROMAT_FILE: MSMg01no443_n24.b1 PHD_FILE: MSMg01no443_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:36 2005CHROMAT_FILE: MSMg01no443_n24.g1 PHD_FILE: MSMg01no443_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,317,561 - 85,317,809)(85,455,814 - 85,456,188)
sequence
CCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCG
GAATTCTCATAATTTTCTTCCAAAACCCTAGTACTTATTATGCACAGCCT
AAGGACATAATGAGTGAGAAATTGGCTCTGTTCCGGGGGAAGCCCAGGGG
AAATCTCTTTATCAAACATTGTTTGTTCACTCATCATTCTGCTCAAGGAG
AGAATCCTGCCTTCCATTGTCCTCTCTGCACATCAGATGCTCTTGCCCTT
AGCAACTTCCATTGTCTTCTGTTTATTGTGGGAAACACAGTGTCGATCTA
TAAGGAGGCACAGTATGCATATGTTATGCCATTAGAAGCACTTACATCTT
AAGGACTAGCATATCATGCTACATTTATCTCTACATAAATTACATGAATT
GGGTGGATGGATGGGTGGATGCACCCNCNCCTTCTCCCTTCGCGTCTCCC
TTCTATTAATTGCGTGAATATCCCCTTTTTTTCTCATACTGTATTCCTCG
ATCCCCCCCAATATTCCGGTTTTTTTCCCTTCTTTATTCTCCCGTCCCCA
TCTTATATCTCTCCCTCTCTTTTTCCCCTTTTTCCCCCCCCCCTCCTCTT
CTTATTCCCATTCCTCACTATTTTTCTCCACCTCCCTTTTTTCTAATTTT
ACTATTTTCCCCTTCCCCCCCCCCCTTTTCTCCCCTTCTCCCATCNATCT
TTCCTTTTTTTTTTTCACCAAAACAATATTTTCTATCCCTTCCTTTTCCG
TTTATGTTTTATCTCTTTTCTTCCCCCCCC
NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGTATGGAATATAGTTCTTTA
ATAAGAGAATATGACTTGTCTTTGAGGAACAAAATAGTCCTTTAAACAGC
TTATAGATAACATGAAATGAAAGATGAATACATTTGAGTACATCATCATT
TATTGCATCCCAGTCTTATCTGAAACTTGTTGCAGTTCTTCCACTTCCAA
CACTAGGGTGTACAGATTGAAAGCCTGTACCAACCCATACAGCATATTAC
TGTATTAATTTAAATCCTAAAAACATTTAACCTTTATACAAAGTTAAAGA
ACAATCAATAGACTAAGGGAACTCATCCTGGTGTGTGCAAACAACAGAAA
ATTTGCATACAGAATAATTAAAATTCCCCAAATATGAAAAGGGCAACACC
CAAGTTTTCACCTTAGAAATTTATGTTGCCATTACAAGATATTGTCTACC
ACTGATTCAGTTTGGAAGGACAACTATATCCCGGCACGGAATTTAATGGG
AAAAATGTTCTTCCCCTCTTAAGGATTTCCGAAAATTAAATTTTAAAGGC
CTTCCGCAAAAATATTTGGTGAGATAAACCAAAAGCCTTTTTTCACCCTT
CAAGGAATACAGCCTCTAAAATTAGGCGGCTCTCCATAAGTTTTCCAGGG
TCCCCCCTTTTCACTTTCGCAAAATTTCGCGCCAATTGCGATGGCTCCTT
TATAATATTCCCCCCCGTTTTTCCCGCCCTTTTTCATTCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_n24.b1 MSMg01no443_n24.b1 CHROMAT_FILE:
MSMg01no443_n24.b1 PHD_FILE: MSMg01no443_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:36 2005
         (249 letters)



>mm_chr7_85317361_85318009
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaccctagtacttattatgcacagcctaaggacataatgagtgagaaattggctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaccctagtacttattatgcacagcctaaggacataatgagtgagaaattggctctg 260

                                                                       
Query: 61  ttccgggggaagcccaggggaaatctctttatcaaacattgtttgttcactcatcattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccgggggaagcccaggggaaatctctttatcaaacattgtttgttcactcatcattct 320

                                                                       
Query: 121 gctcaaggagagaatcctgccttccattgtcctctctgcacatcagatgctcttgccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcaaggagagaatcctgccttccattgtcctctctgcacatcagatgctcttgccctt 380

                                                                       
Query: 181 agcaacttccattgtcttctgtttattgtgggaaacacagtgtcgatctataaggaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaacttccattgtcttctgtttattgtgggaaacacagtgtcgatctataaggaggca 440

                    
Query: 241 cagtatgca 249
           |||||||||
Sbjct: 441 cagtatgca 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_n24.g1 MSMg01no443_n24.g1 CHROMAT_FILE:
MSMg01no443_n24.g1 PHD_FILE: MSMg01no443_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:36 2005
         (375 letters)



>mm_chr7_85455614_85456388
          Length = 775

 Score =  710 bits (367), Expect = 0.0
 Identities = 373/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtatggaatatagttctttaataagagaatatgacttgtctttgaggaacaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttctgtatggaatatagttctttaataagagaatatgacttgtctttgaggaacaaaata 516

                                                                       
Query: 61  gtcctttaaacagcttatagataacatgaaatgaaagatgaatacatttgagtacatcat 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gttctttaaacagcttatagataacatgaaatgaaagatgaatacatttgagtacatcat 456

                                                                       
Query: 121 catttattgcatcccagtcttatctgaaacttgttgcagttcttccacttccaacactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 catttattgcatcccagtcttatctgaaacttgttgcagttcttccacttccaacactag 396

                                                                       
Query: 181 ggtgtacagattgaaagcctgtaccaacccatacagcatattactgtattaatttaaatc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtgcacagattgaaagcctgtaccaacccatacagcatattactgtattaatttaaatc 336

                                                                       
Query: 241 ctaaaaacatttaacctttatacaaagttaaagaacaatcaatagactaagggaactcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctaaaaacatttaacctttatacaaagttaaagaacaatcaatagactaagggaactcat 276

                                                                       
Query: 301 cctggtgtgtgcaaacaacagaaaatttgcatacagaataattaaaattccccaaatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cctggtgtgtgcaaacaacagaaaatttgcatacagaataattaaaattccccaaatatg 216

                          
Query: 361 aaaagggcaacaccc 375
           |||||||||||||||
Sbjct: 215 aaaagggcaacaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)