BAC Information

Click to search

BAC

Clone NameMSMg01-444C11
Chromosome7 (Build37)
Map Location 51,834,790 - 52,004,677
singlet/doubletdoublet
Overlap geneNapsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3
Upstream geneZfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444C11.T7 (MSMg01no444_c11.b1)MSMg01-444C11.TJ (MSMg01no444_c11.g1)
ACCAG533389AG533390
length747736
length of high quality
(start - end)		344 (72 - 415)225 (374 - 598)
definitionCHROMAT_FILE: MSMg01no444_c11.b1 PHD_FILE: MSMg01no444_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:58 2005CHROMAT_FILE: MSMg01no444_c11.g1 PHD_FILE: MSMg01no444_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,004,334 - 52,004,677)(51,834,790 - 51,835,014)
sequence
NCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATGCGC
GGAATTCACTATTTTACAAATCCTCCTGACTCAGCTTCCCAAGTGCTAGA
ACATTGCTGAGTTTAGATCTACTCCTAGGGGAGGTGGCAGTTCGGGTATA
TAATACAATAAGTGTCTGTTGCACAGATCCTTGCATACAGTAAGTGCTCG
GATCTTGAGTGTTGAGGTCTCCTGTCTAAGGTTGCACATTCAGTTCCGAC
TACTGATACTCAAGTCGGCTTTTATTATGCACCCATTTTTTTAGTTCATT
TATCCTACGTATGATCTTTTTTTTGCTACCATCTATGCTCCTGTTGCAGG
AACGCAGCACAGCAGAGTACCAAAGGCTAAACTCCACAGGTGTGGTACTA
ACACTTCCCTAAGTAGCTGAGACTGTACCGGGGTCCCACAATCCCAAAGA
AACCAGTGTCGAGTTACCCGTGTAGGCGCAGGCGTATTGTCTGACATTCC
TCATAGTTTCCGCCTTTTTTCTTCTTTGCATATCAGAGCAAGTGGTTGTT
CCCCTTCTTCCCGTTTTCGAATTTCAGCCTTTGGTCGTTCCTCGTCTTCC
TTAAATTTTTGACCCTTTCAGTGCTGTTCCTTTTTTTTTCTCCCTTTCCC
TTGCAATTTGTCTTACTTTTACTAGATCCGCCCCTACTTTTTCCTTTTTC
TCTTTAATTCTTCCTCCTTACCCGCACTTTTCCCCCCCCCCGCCCCC

NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAGAAAAATTCAGGGCCAGCCTGGNCTACAGAGTG
AGGTTCAGGATAACCATTGCTACTTAGTGAGACCCTGTCTCAAAACAAAC
AAACAAATAAGACCACCTACATAAACCAACTTTTATTTAGGTTTTTTTTT
GCATGTGAATTTTGCATGATGCAGAGACTTTTATAATTTTACTTTTAATT
ATTATTATTTATTGCCTATGTGGAGGGGTCTAAGGACAACTTGCAGAAAT
CAGTTCTGTCCTTCCACCATTATCTCGNCGGNATGCCTGCTTGAGTGCTG
CCATGCTGTACTATAACCCCCAGGTTAGGCTCTGGCATTTATATCCCCCT
CCCCCAAGTGTGGGTCCCACCATCAGGCTTGAAGCCCCTAAGAATTCACA
TTGCAACAGTAAGCTTTTGGTCCTCCCTCCCCTCCACAAGGCCCATGTAA
AGAATTGTCAGTGCAGGGCTGGAGAGACATGGCCCAGCGGTTAAGAGCAC
TGGCTCCTCTCCCAGAGAGCTCAGCTTTGATTCCCAGCACTCACAAGGAA
CCTCACAGCGCGCTGAAACTTCAGTTTCAAGGGGTTGATCTGATATTTTT
TTTTTTTCTCTGCAGTCTCCATACCAGAACATAGTGCACGTATATACTTG
CAGACCAAAAAGCCACACTCGTTTAAACTTTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_c11.b1 MSMg01no444_c11.b1 CHROMAT_FILE:
MSMg01no444_c11.b1 PHD_FILE: MSMg01no444_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:58 2005
         (344 letters)



>mm_chr7_52004134_52004877
          Length = 744

 Score =  572 bits (296), Expect = e-168
 Identities = 332/350 (94%), Gaps = 12/350 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcctgactcagcttcccaagtgctagaacattgctgagtttagatctactcctagggg 60
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 544 cctcctgactcagcctcccaagtgctagaacattgctgagtttagagctactcctagggg 485

                                                                       
Query: 61  aggtggcagttcgggtatataatacaataagtgtctgttgcacagatccttgcatacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggtggcagttcgggtatataatacaataagtgtctgttgcacagatccttgcatacagt 425

                                                                       
Query: 121 aagtgctcggatcttgagtgttgaggtctcctgtctaaggttgcacattcagttccgact 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 424 aagtgctcggatcttgagtgttgaggtctcctgtctaaggctgcacattcagttccgact 365

                                                                       
Query: 181 actgatactcaagtcggcttttattatgcacccatttttttagttcatttatcctacgta 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 364 actgatactcaagtcggcttttattatgcacccatttgtttagttcatttatcctacgta 305

                                                                       
Query: 241 tga---tc---ttttttttgctaccatctatgctcctgttgcaggaacgcagcacagcag 294
           |||   ||   ||      |||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgaccatcagctt------gctaccatctatgctcctgttgcaggaacgcagcacagcag 251

                                                             
Query: 295 agtaccaaaggctaaactccacaggtgtggtactaacacttccctaagta 344
           |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 250 agtaccaaaggctaaattccacaggtgtgggactaacacttccctaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no444_c11.g1 MSMg01no444_c11.g1 CHROMAT_FILE:
MSMg01no444_c11.g1 PHD_FILE: MSMg01no444_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:58 2005
         (225 letters)



>mm_chr7_51834590_51835214
          Length = 625

 Score =  412 bits (213), Expect = e-120
 Identities = 222/225 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaggctctggcatttatatccccctcccccaagtgtgggtcccaccatcaggcttgaa 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 201 gttaggctctggcatttatatccccctcccccaagcatgggtcccaccatcaggcttgaa 260

                                                                       
Query: 61  gcccctaagaattcacattgcaacagtaagcttttggtcctccctcccctccacaaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccctaagaattcacattgcaacagtaagcttttggtcctccctcccctccacaaggcc 320

                                                                       
Query: 121 catgtaaagaattgtcagtgcagggctggagagacatggcccagcggttaagagcactgg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 catgtaaagaattgtcagtgcagggctggagagacatggcccagtggttaagagcactgg 380

                                                        
Query: 181 ctcctctcccagagagctcagctttgattcccagcactcacaagg 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctctcccagagagctcagctttgattcccagcactcacaagg 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |