BAC Information

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BAC

Clone NameMSMg01-445A08
Chromosome7 (Build37)
Map Location 109,167,123 - 109,364,477
singlet/doubletdoublet
Overlap geneRnf121, Trpc2, Art5, Art1, Chrna10, Nup98
Upstream geneLOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445A08.T7 (MSMg01no445_a08.b1)MSMg01-445A08.TJ (MSMg01no445_a08.g1)
ACCAG534050AG534051
length775769
length of high quality
(start - end)
268 (40 - 307)356 (68 - 423)
definitionCHROMAT_FILE: MSMg01no445_a08.b1 PHD_FILE: MSMg01no445_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:06 2005CHROMAT_FILE: MSMg01no445_a08.g1 PHD_FILE: MSMg01no445_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,167,123 - 109,167,386)(109,364,122 - 109,364,477)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGGTATAACTCCCTCAGAATCCAGGATCTCTAGGAGTTAGGTCCAGAAGT
TGTGCATCCACACACAGCCATTGGGGGATTTCTCATTCCACTGGGGTTTG
GGTAGGGGTGCAGGACGAGGAACTGCACTGTACCTTACAAGACTAAAGGT
AAAACATAGACGTAGCCTTCACCTTAGGGAGAGGGGAGGACAAATACCAA
AGGAAGAGTAGCCTGTCTCTTGGCCTTCTGCTCAGCTCCCATTCCTCTGA
GGATGGAGGTATTTAGGAAGCCACAGCTGACTAAGAGAACAGGCTGAGTT
GTGGGGGTATCAGGGTACTAGTCTCAGACTGGGGGTGAAGGCCTCAGGGC
CCCTGATGCCGTATGACAGGAGACACACACACACACATCACTCTTTTCAC
TCTCTGACGCCGTATTAAATGAGACCCCCTCACCTCACCCACTTTTATCC
TTCCTCCTTGAGCGCTCGCCTGCCTTATAATCTGCCCCTCATCCGATCAG
ACTTAAATTGATCACCAATCCCCCAATTTAGAAATACACAGGGCGCACCC
CCCTCCGCTCACCCGACAAATACACACGACCACCAGCCAATGCAGATCCC
AATCTCTATGACTCTAGAATTCCACATCAGTAAGTTCCACATATTGCAGA
GTTTTTCCTCCAATTGTATTATTGACTCTCTTTCAATCCACCCGTAAAGC
TTTTCTTCCGCCCCTATTACTGATN
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTGTCTAGACCCCCCCTCACACACCCTTCTGG
AAGTTCTTTTATTTTCTGAGATAGTTTCAATCTGTGACCCAGACTGGCTA
GAAGTTACTATATAGCCTAGGCTGGTCTCAAAAATCACAACTCTCCTGCC
TCAGTCTCTCAAGTGTTCAGGAGCTAGTTTAAGGAGGCAACCCCCACTTA
ATGGATTACTTGATCTTTCAGCCTAATGTAGGGGCTAGAATAGAGTAAGA
GCGTATTTGATAGACTTTACTGAACTGGGTTTTAAAGACTGTACTGAAAC
AAACCTAGCAGCGCTTTAAGAATTGCAAGATAGGCCTTTTGAAAGCAATT
GCTAGTGATTGGGAGGGAGGGAGGAGTGTTGTCCTTCTCTTGTCTTTAGT
GTCGTGATTCTTTTTTATTTCGTGCCTTTTTTTTTCCTCCCCCTTTCTCT
ATTCTACTAGCCCCTTTTTATTTTTCGTTTTCTTGCTGCGGTCGCCGTTT
TCTTTTTTCCGCCCGTTCATTGTGTTTTTACTCCTTTTGTCATTGTTTTT
TTTTTGCCTTCCCGCTTCTATATTTCCGTACCGTTTGTATTCTTTCTCTC
TTTTTTTGCACTTCTTGCGTATTGGTCCCGGTGCCTTGTCAGCCTACTCT
ATATTTAATCAGTCTTTCTGTGTTATATTAATCTGCTACCGTATGCATTA
TCTCTTCCCCCCGTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_a08.b1 MSMg01no445_a08.b1 CHROMAT_FILE:
MSMg01no445_a08.b1 PHD_FILE: MSMg01no445_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:06 2005
         (268 letters)



>mm_chr7_109166919_109167586
          Length = 668

 Score =  487 bits (252), Expect = e-142
 Identities = 261/264 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagggtataactccctcagaatccaggatctctaggagttaggtccagaagttgt 64
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggcaaaactccctcagaatccaggatctctaggagttaggtccagaagttgt 264

                                                                       
Query: 65  gcatccacacacagccattgggggatttctcattccactggggtttgggtaggggtgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatccacacacagccattgggggatttctcattccactggggtttgggtaggggtgcag 324

                                                                       
Query: 125 gacgaggaactgcactgtaccttacaagactaaaggtaaaacatagacgtagccttcacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacgaggaactgcactgtaccttacaagactaaaggtaaaacatagacgtagccttcacc 384

                                                                       
Query: 185 ttagggagaggggaggacaaataccaaaggaagagtagcctgtctcttggccttctgctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagggagaggggaggacaaataccaaaggaagagtagcctgtctcttggccttctgctc 444

                                   
Query: 245 agctcccattcctctgaggatgga 268
           ||||| ||||||||||||||||||
Sbjct: 445 agctctcattcctctgaggatgga 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no445_a08.g1 MSMg01no445_a08.g1 CHROMAT_FILE:
MSMg01no445_a08.g1 PHD_FILE: MSMg01no445_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:06 2005
         (356 letters)



>mm_chr7_109363772_109364527
          Length = 756

 Score =  688 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtctagaccccccctcacacacccttctggaagttcttttattttctgagatagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cttgtctagaccccccctcacacacccttctggaagttcttttattttctgagatagttt 647

                                                                       
Query: 61  caatctgtgacccagactggctagaagttactatatagcctaggctggtctcaaaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caatctgtgacccagactggctagaagttactatatagcctaggctggtctcaaaaatca 587

                                                                       
Query: 121 caactctcctgcctcagtctctcaagtgttcaggagctagtttaaggaggcaacccccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 caactctcctgcctcagtctctcaagtgttcaggagctagtttaaggaggcaacccccac 527

                                                                       
Query: 181 ttaatggattacttgatctttcagcctaatgtaggggctagaatagagtaagagcgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttaatggattacttgatctttcagcctaatgtaggggctagaatagagtaagagcgtatt 467

                                                                       
Query: 241 tgatagactttactgaactgggttttaaagactgtactgaaacaaacctagcagcgcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgatagactttactgaactgggttttaaagactgtactgaaacaaacctagcagcgcttt 407

                                                                   
Query: 301 aagaattgcaagataggccttttgaaagcaattgctagtgattgggagggagggag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagaattgcaagataggccttttgaaagcaattgctagtgattgggagggagggag 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)