BAC Information

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BAC

Clone NameMSMg01-445A16
Chromosome7 (Build37)
Map Location 76,234,226 - 76,397,621
singlet/doubletdoublet
Overlap geneLOC384741
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneEG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445A16.T7 (MSMg01no445_a16.b1)MSMg01-445A16.TJ (MSMg01no445_a16.g1)
ACCAG534066AG534067
length755766
length of high quality
(start - end)		245 (62 - 306)442 (69 - 510)
definitionCHROMAT_FILE: MSMg01no445_a16.b1 PHD_FILE: MSMg01no445_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:07 2005CHROMAT_FILE: MSMg01no445_a16.g1 PHD_FILE: MSMg01no445_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,234,226 - 76,234,470)(76,397,180 - 76,397,621)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCGGAATTCTCTC
CTTGGCCCTGAGAATACATGGTGATGGATGTAGGCATGCAGGGAAGAATT
GAAGACCCAAACAAATCCTGCAAAACAGTTCCTACTGGAAGCCAAGGACT
CAAATTGTACAGATGTTGTCTTTTTATAGAACCTTGCTGGGTCTTTTGTC
TTGAATGAACTGAAAGTGGGACCCTAGAAAGTAGACAGTCTAGGACTTAT
CCTGGATTCTTGATGAGAAAGGCAGATTTCCTTGCTAAGCCCTAGCACTT
GTTCCTTNGTANTTGTTGCTGTGAGTGCTGGCCAGAGCTGTGGTTTCAGC
CTATGCAGATGAGGAGTAAGAAACATTGTTGCCCTTTGGCTACTGCTGAA
AATGAACCCTATTTCCCAGACTCTACAGGCTTGCACTCTCTGATTCTGAA
TAAATACTTCCTGAATAATTCAGGATTCTCTAGAGGATGTGGAGAAAGAG
GAAAACTCCTCCATTGCTGGTGGGATTGCAAGTTTGTACCACCACTCTGG
AAATCAGTCTGGCGATTCTTCATAAAACTTGGAATATTACTACCTGAACA
TCCACCAATAACTCTCCTGGGCATATACCCTATATATTTTTCCACTGGGT
AATAAAGACCCCTGGTTCACTTATCGATCCTACAAGCCCCTAATTAAAAT
ATAATGAACTCTGGCTAAAATTCCCTTTCTTCTCTTCTCTCAAATCTATG
TGTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATTATATTGGCCAACTACTCCTGGGCATA
AAGCCTAAAGAGTGGTTGGTATACACAGTGACATTCCATTGCAGTAAACT
TAATTTCTCTTTTATTGTGGTTACCAATTGTATTTATGTGTAGGACTTTA
TGTCCATGTCCTCTTTTCAGTGCTGAAATGTTGTTTGAACCTGTATGAGT
CTTGCCCACACTGTCACGGTCTCTGAGAGTTCACGTGTACCTTAGTTCTG
CTAGTCTGGATGATGCTTTTTCCTTGGAGTCTTCCATTGCTTTTGCTTCT
TACAACTAGTTTTCCTCTTTTCCCATAGATCCCAGGGGCTTTAAGGTGAG
AGATTCAGAAAAACAATCCTATTTGGGGCTCCAAAGTCTGAATGTATGCT
ATGCTTACATGAGGGGATATCATCATATGATAAGAAAAAGAAAAACTATG
GAATTAGCAGGTAAATTGTTGAGGTTTAGAACGATAATCCCGAATAATGG
TAACTAGATACTCAAGGGACACACTGTATGTTTTTTTCTTATAATCTGGA
TGTAACCTCCCAATTGGGCGGTTTCCAGCCCCTCATTTTTCTTTTTTTTT
AGCTTTTTTTCCCCATGGCGCTATATTATTCTTTCTTTTGTGGGCAAATA
TTTTATTTTTCCGGGTTAATTATATTATATTGCGTTTCGTATGATCATTC
CTATTCACCTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_a16.b1 MSMg01no445_a16.b1 CHROMAT_FILE:
MSMg01no445_a16.b1 PHD_FILE: MSMg01no445_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:07 2005
         (245 letters)



>mm_chr7_76234026_76234670
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatacatggtgatggatgtaggcatgcagggaagaattgaagacccaaacaaatcctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatacatggtgatggatgtaggcatgcagggaagaattgaagacccaaacaaatcctgc 260

                                                                       
Query: 61  aaaacagttcctactggaagccaaggactcaaattgtacagatgttgtctttttatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacagttcctactggaagccaaggactcaaattgtacagatgttgtctttttatagaa 320

                                                                       
Query: 121 ccttgctgggtcttttgtcttgaatgaactgaaagtgggaccctagaaagtagacagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 321 ccttgctgggtcttttgtcttgaatgaactgaaagtgggaccctagaaagtagacagccc 380

                                                                       
Query: 181 aggacttatcctggattcttgatgagaaaggcagatttccttgctaagccctagcacttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aggacttatcctggattcttgatgagaaaggcagatttccttgctaagccctagtacttg 440

                
Query: 241 ttcct 245
           |||||
Sbjct: 441 ttcct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no445_a16.g1 MSMg01no445_a16.g1 CHROMAT_FILE:
MSMg01no445_a16.g1 PHD_FILE: MSMg01no445_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:07 2005
         (442 letters)



>mm_chr7_76396868_76397709
          Length = 842

 Score =  762 bits (394), Expect = 0.0
 Identities = 430/442 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttattatattggccaactactcctgggcataaagcctaaagagtggttggtatacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tttattatattggccaactactcctgggcataaagcctaaagagtggttggtatacacag 695

                                                                       
Query: 61  tgacattccattgcagtaaacttaatttctcttttattgtggttaccaattgtatttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgacattccattgcagtaaacttaatttctcttttattgtggttaccaattgtatttatg 635

                                                                       
Query: 121 tgtaggactttatgtccatgtcctcttttcagtgctgaaatgttgtttgaacctgtatga 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtaggactttatgtccatgtcttcttttcagtgctgaaatgttgtttgaacctgtatga 575

                                                                       
Query: 181 gtcttgcccacactgtcacggtctctgagagttcacgtgtaccttagttctgctagtctg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 574 gtcttgcccacactgtcacggtctctgagagttcatgtgtaccttagttctgctagtctg 515

                                                                       
Query: 241 gatgatgctttttccttggagtcttccattgcttttgcttcttacaactagttttcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gatgatgctttttccttggagtcttccattgcttttgcttcttacaactagttttcctct 455

                                                                       
Query: 301 tttcccatagatcccaggggctttaaggtgagagattcagaaaaacaatcctatttgggg 360
           |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct: 454 tttcccatagatcctaggggcttgaaggtgagagattaagaaaaacaatcctatttgcgg 395

                                                                       
Query: 361 ctccaaagtctgaatgtatgctatgcttacatgaggggatatcatcatatgataagaaaa 420
           || |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 394 cttcaaagtctgaatgtatgctatgcttacacgagggaatatcatcatatggtaagaaaa 335

                                 
Query: 421 agaaaaactatggaattagcag 442
           ||||||| ||||||||| ||||
Sbjct: 334 agaaaaattatggaattcgcag 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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