BAC Information

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BAC

Clone NameMSMg01-446B11
Chromosome7 (Build37)
Map Location 6,765,040 - 6,765,301
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446B11.T7 (MSMg01no446_b11.b1)MSMg01-446B11.TJ (MSMg01no446_b11.g1)
ACCAG534868AG534869
length723746
length of high quality
(start - end)
262 (364 - 625)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no446_b11.b1 PHD_FILE: MSMg01no446_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:31 2005CHROMAT_FILE: MSMg01no446_b11.g1 PHD_FILE: MSMg01no446_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCACAATTTCGTACCTGCGCGGNAATCTCGGAA
GTGACATCACTAGAGATGACATCATCGAAGCAGGTATCAAAGCATCTATG
AGAAACCGATTGCGGAAGCAGAGGCTGTCATTTCCTGATGAGCTTTCTCT
CTCTCCATGGCCGAGCTTCCCATGTCTGAATCTCTGGTTTATTTTTTCCA
TTGTAGCCACTTCTACATCATAGGATTAAACAATAGTCACCTTCCTAGGA
GTCTGCGAGGGCACAGTGTTTTTACTTTTTGCCTGTTTTGTTCTCTTTCC
TCCCTTTTCAATGGTGTGGGCCAGCACAGCCTCAGACAAGGGGCCTTGTT
TTAGATTTCGAGCCAAACATGCTTGAGTCTGAAACAGGAGAGGCCAACCC
CAATCCCAGAGCCAGCTTCACTGTGAGCTCAAACAACACATGGTATTTAT
CACTATAACATATATTACAGAAACAAATGACATTCTTCAATGCAGACATC
CAATCCCCTTTCTGTGTTCCGTTTTCAAAAGAGCCACCTTCTCCTGGCTT
TAAAATGCTGCGTCACACTGCAGCATGCAGCAGACACTCTGCTTGCACAT
GCGTTCTGTGCGATGGCTTCTGAGTTTCCACTCCCGTTCACAGTTTTTTT
TGTTTTCCTGCAGATATACAAGCCTTCCTGAGTTACTTGTTAACCTTGGG
CTGGAAACAGAATGACCTATTAN
TGTGGGAGGCCTGGNGGNCGCCTGGGTTCAAAACCGGGGGNGACACNANA
GAAGGTTACGAGAAAATCTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAC
TCAGGCGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTATGGAAATCAGTCT
GGCAGTTCCTCAGATTACTGGTTATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGNAC
ATCTACACAATGGAGTACTTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGGA
ACACATTTCCCAAGGAACTCACACCATATGTACCCCCTGAAAAGTGGATA
TTATTTCTTTTCCTAAGAATCCCCCAGAAATCAGATACGTTCTTCCCTAA
ACACATTGGAAACCCCTTAACAAATGCCATAATGTAAGTGTGAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_b11.b1 MSMg01no446_b11.b1 CHROMAT_FILE:
MSMg01no446_b11.b1 PHD_FILE: MSMg01no446_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:31 2005
         (262 letters)



>mm_chr7_6764840_6765501
          Length = 662

 Score =  499 bits (258), Expect = e-146
 Identities = 261/262 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacatgcttgagtctgaaacaggagaggccaaccccaatcccagagccagcttcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacatgcttgagtctgaaacaggagaggccaaccccaatcccagagccagcttcactg 260

                                                                       
Query: 61  tgagctcaaacaacacatggtatttatcactataacatatattacagaaacaaatgacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgagctcaaacaacacatggtatttatcactataacatatattacagaaacaagtgacat 320

                                                                       
Query: 121 tcttcaatgcagacatccaatcccctttctgtgttccgttttcaaaagagccaccttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcaatgcagacatccaatcccctttctgtgttccgttttcaaaagagccaccttctc 380

                                                                       
Query: 181 ctggctttaaaatgctgcgtcacactgcagcatgcagcagacactctgcttgcacatgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggctttaaaatgctgcgtcacactgcagcatgcagcagacactctgcttgcacatgcg 440

                                 
Query: 241 ttctgtgcgatggcttctgagt 262
           ||||||||||||||||||||||
Sbjct: 441 ttctgtgcgatggcttctgagt 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)