Query= MSMg01no447_a17.b1 MSMg01no447_a17.b1 CHROMAT_FILE:
MSMg01no447_a17.b1 PHD_FILE: MSMg01no447_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:45 2005
(570 letters)
>mm_chr7_96190095_96191061
Length = 967
Score = 942 bits (487), Expect = 0.0
Identities = 542/571 (94%), Gaps = 21/571 (3%)
Strand = Plus / Plus
Query: 1 aaagcagtctccaccaggtaaagcatgactactttacagatttatattttaagctttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcagtctccaccaggtaaagcatgactactttacagatttatattttaagctttaaa 260
Query: 61 aaaaaatctttaatctactctgttatgtaattttgggctaaattacagaatgggatctga 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaactttaatctactctgttatgtaattttgggctaaattacagaatgggatctga 320
Query: 121 ggtttagtgctaatgctaggagaagacatgacattataaaacaaagtaaagaaaatgagt 180
|||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 321 ggtttagttttaatgctaggagaagacatgac---ataaaacaaagaaaagaaaatgagt 377
Query: 181 ataaaagtataaagaagcgttttgttcccacccattaaataaacacacacacacacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ataaaagtataaagaagcgttttgttcccacccattaaataaacacacacacacacacac 437
Query: 241 acacacacaaacacactttcacacacacaaaaacctatccaaataggcccatcagtcatc 300
||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct: 438 acaca--------------cacacacac--aaacctatccaaataggcccatcagtcacc 481
Query: 301 agaacagggaaaagagcccattcaaaaagccgaaactcaagaactgaaggaatatggtgc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 482 agaacagggaaaagagcccattcaaaaagctgaaactcaagaactgaaggaatatggtgc 541
Query: 361 atccgaaggaaagcccctttaaaagatggtagatcatccccttaatgagagacattcttg 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atccgaaggaaggcccctttaaaagatggtagatcatccccttaatgagagacattcttg 601
Query: 421 catcccacagaaccttcctcactgcagttatttatagagccttgatgatga-gaaacctg 479
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 602 catcccacagaaccttcctcactgcagttatttatagagccttgatgat-atgaaacttg 660
Query: 480 cctgctttttcattcaaactcaggaagtatcaccttttcttttctctctttttgtcttcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cctgctttttcattcaaactcaggaagtatcaccttttcttttctctctttttgtcttcc 720
Query: 540 ttttcaaacacaaaccaaaaccatatgctcc 570
|||||||||||||||||||||||||||||||
Sbjct: 721 ttttcaaacacaaaccaaaaccatatgctcc 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 967
Length adjustment: 10
Effective length of query: 560
Effective length of database: 957
Effective search space: 535920
Effective search space used: 535920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_a17.g1 MSMg01no447_a17.g1 CHROMAT_FILE:
MSMg01no447_a17.g1 PHD_FILE: MSMg01no447_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:45 2005
(430 letters)
>mm_chr7_96366288_96367117
Length = 830
Score = 760 bits (393), Expect = 0.0
Identities = 405/409 (99%)
Strand = Plus / Minus
Query: 1 tgtcactgtgaaatcccggtgtatccttggctctgtctataaaggtgctcccaagaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgtcactgtgaaatcccggtgtatccttggctctgtctataaaggtgctcccaagaagtg 350
Query: 61 aaaagtgaaagcaggctttaataagaatcaagtaaactctcatattctttttttgggtgt 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 349 aaaagtgaaagcaggctttaataagagtcaagtaaactctcatattctttttttgggtgt 290
Query: 121 gtgtttgatgatttggtatttttaatgcttgccatgtaaaaaatgatagccatctttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtgtttgatgatttggtatttttaatgcttgccatgtaaaaaatgatagccatctttttg 230
Query: 181 agtacggatgataacatttgcattaaggagacttaggatctctaatgaggttgcagacca 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 agtacgcatgataacatttgcattaaggagacttaggatctctaatgaggttgcagacca 170
Query: 241 aattattggcaaaggctgcaatcaaggcttgattggagttgaatttgtcttccaacttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aattattggcaaaggctgcaatcaaggcttgattggagttgaatttgtcttccaacttcc 110
Query: 301 cctcatagctgtttagcagaaagctcttaattctttgttgactgttgtagaaggcctatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 109 cctcatagctgtttagcagaaagctcttaattctttgttgactgttgtagaaggcctctt 50
Query: 361 ttttccttacaatgttaaaacatccacagatttgtctgaacgagtcaac 409
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tttttcttacaatgttaaaacatccacagatttgtctgaacgagtcaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
