BAC Information

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BAC

Clone NameMSMg01-447H24
Chromosome7 (Build37)
Map Location 6,980,767 - 6,980,947
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
Downstream geneLOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447H24.T7 (MSMg01no447_h24.b1)MSMg01-447H24.TJ (MSMg01no447_h24.g1)
ACCAG535939AG535940
length794808
length of high quality
(start - end)
434 (53 - 486)188 (84 - 271)
definitionCHROMAT_FILE: MSMg01no447_h24.b1 PHD_FILE: MSMg01no447_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:25 2005CHROMAT_FILE: MSMg01no447_h24.g1 PHD_FILE: MSMg01no447_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTCATCTTTCTATGACTTTTATCATGAAGGGGTGTTGG
ATTTTGTCAAATGCTTTCTCAGCATCTAAGGAGATGATCATGTGATTTTT
GTCTTTGAGTTTATTTATATAGAGGATTACGTTGATGGATTTCTGTATAT
CAAACCATGCCTGCATCCCTAGGATGAAGCCTACTTGGTCATGATGGATA
ATCGTTTTGATGTGTTCTTTGATTCAGATTGCGAGGATTTTATTGAGTAT
ACTTGCAACGATTCATAAGGGAAATTGGTCTTCAGTTCTCTTTCTTTGTT
GGATCTTTGTATGGTTTAAGTATCAGAGTAATTGTGGCTTCATAGAATGA
ATTGGGTAGAGAACCTTCTGTTTCTATTTTGTGGAATAGTTTGAGGAGAG
TTGGAATTAGGTCTTCTTTGAAGGTCTGATAGAACTCTGCACTACACCCA
TTGGGTCCTGGGCCTCTTTTTGTTTGGGAGATTGTTAATGACCACTCCTA
TTTTCTTAGTGGATATGAGATAGTTCATATCTTTAACATGATTCTGCAAT
TAACGTTGGCACCTGGGTATTTGCCCCGGAAAGTGCTTTTTTCTCTTCCA
AAATATATTAATAACAAAATGTCCTTTCTCCGGTTAATAAATCTTCCGCA
TTCATATAAATTCCTCTCTTAAACTCCCTCATAATATCTTTGTTTAATTA
TCCAAGTGGCCTTTTCTTTTTATCTTTGTCCTTACTACTCACAA
AAAAGCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAATGTGAGAGTG
GTGAGCCAAATTACTGTTTTTTCTCCCCCCCCCCCTTGCCCTCAGTCTTT
GGCCAGAAGGAGTTACTAGCTGATAAATACTTGGCTGGATACTGGGAAGA
AACTACATTACCCACAATCCTATCCCTACGGCACCACTGAATTATGGGGA
GTGGGGTAGGGTAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNTTTNNTTNNTTNNTNNN
TNNNNNNNTTTTTNTTTTTTTNTTTTNTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTNNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TNTCTTTTTNNTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTT
TTTNTTTNTTTTTTTTTTCTTTTTTTTTTTTTTTTNTNNNNNTTTTCTTN
TTTTNTTTTTTCCCTTNCTCTTCTCTCTTCTCCTCTCTTTTTTCCCTCTT
NTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_h24.g1 MSMg01no447_h24.g1 CHROMAT_FILE:
MSMg01no447_h24.g1 PHD_FILE: MSMg01no447_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:25 2005
         (188 letters)



>mm_chr7_6980567_6981151
          Length = 585

 Score =  313 bits (162), Expect = 3e-90
 Identities = 179/186 (96%), Gaps = 7/186 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catataatgtgagagtggtgagccaaattactgttttttctcccccc-cc-cccttgccc 58
           |||||||||||||||||||||||||||||||||   |||| |||||| || |||||||||
Sbjct: 201 catataatgtgagagtggtgagccaaattactg---tttc-cccccctccacccttgccc 256

                                                                       
Query: 59  tcagtctttggccagaaggagttactagctgataaatacttggctggatactgggaagaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcagtctttggccagaaggagttactagctgataaatacttggctggatactgggaagaa 316

                                                                       
Query: 119 actacattacccacaatcctatccctacggcaccactgaattatggggagtggggtaggg 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 317 actacattacccacaatcctatccctacggcaccactgaattatggggagtggggt-ggg 375

                 
Query: 179 taggag 184
           ||||||
Sbjct: 376 taggag 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 585
Length adjustment: 8
Effective length of query: 180
Effective length of database: 577
Effective search space:   103860
Effective search space used:   103860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)