BAC Information

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BAC

Clone NameMSMg01-448G04
Chromosome7 (Build37)
Map Location 145,588,505 - 145,588,742
singlet/doubletsinglet
Overlap geneTcerg1l
Upstream gene9430038I01Rik, Txnl2, LOC435235
Downstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448G04.T7 (MSMg01no448_g04.b1)MSMg01-448G04.TJ (MSMg01no448_g04.g1)
ACCAG536612AG536613
length794816
length of high quality
(start - end)
395 (41 - 435)238 (83 - 320)
definitionCHROMAT_FILE: MSMg01no448_g04.b1 PHD_FILE: MSMg01no448_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:39 2005CHROMAT_FILE: MSMg01no448_g04.g1 PHD_FILE: MSMg01no448_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGTGTTXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAAT
TCAGAACTTTTCTTCCGGGGAACGAGAGTACCAGTGAGTACAGCTTTACG
AGGTAAGTCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCAG
AAGTAAAGTGGAAAATGGCTTTGCAAGGTATATTTGGCCTTGAATTTTTT
CTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAA
GGCAGGGCGGATTCTAGATGAAATTCAGGACAAGCTATCAGAAGTAAAGC
GGGGAGAGAGAGTAGGAGCATAGAGAAAATATGGTACACAAAATAAGTAT
ACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAG
GAATACCTGGAGAGAGATTAGAAGAAAAAGAGGATAAAGGGAAAAGAAGA
AAGATCTATTAGCGGAGGTCTCTAGGAAAAGGAGTCTGTGGTCATCGCTG
GATGGCCTCTTGGAGTCAGCTCCCAGCACCTCTGAAGCTTACGAATATTT
CCTTCCGAACAATTTAAATGGTTTGTAAGATATCGCCTTATCATAAAAAC
CCAATTTTCCCCTTCCCCTCCCTGTGTCCCACTTTTCCGCCTCCGGTGAG
TCTCTATATGGCCGGTTACCCATATTTTTCTGTGCGCACATACGCTAATT
TTACATCCTGTTTTTCCCCGCTCTTTTTTTTATTTCCCCAAACACCCCCT
CTGTGACCGAAAACTCTGTTCTCCTTACGGTGTACCCACCGCTN
TTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAGCACTGCCCTGA
ATCTATGTGAAGGAGTAGGGGGACCAGATCAGAATCAGAAATAGCTATTG
ATCTGCAGCTTGCTTTCAAGTCTGGTGGAGACTGTAAAAGTATTAACTTC
GAGGCGATGGCAGCCACGGTTGTTGGCTGCAGCGCTCTGCTTGGAGGCAG
CGACTTCAGGACCGCGTTCTGGACAGCGCCCGGCGCCGGGGAAAGTTGGG
TCCAAGCTGTTTGGCTTCAGTCTTTTATGCGGGATCTAGGGCGGTCTAAT
GACAGCCAGGTGATAATATTCGGCATTAAAAAAATTAGATTGCCATAGTT
TACCCGGACTTCTATACCTGATTCTTTTTCCGGCATTGTCTGAACTGCCC
GTTCTCCCTCTTGTTTGTTCCCGCATTTTTTTTTTTTCTTCTCTTTGCCC
TCGGCAATAGTTTTACTCCTAGTTTATTTCTTTACTTCCCGTACATCTCT
TCCCACCCCCCTTTATTCTCTTTCCTTTCTGCCCATTTCTGTTTGTTTTT
TTATATTTCCCTCCCCCCCCACCCCTTTCTTTCTCTTTTTCCTTCTTTTC
CTTTTCTCTTCTCTTCTCTTTTCTTGTCTTTTTCTTCTTGCTTTCTCTTT
CCCCGTTTTCCTTCCCCCCCTTCTTTTCTTCTTTTTCCCCTCTATCTCCC
CCCCTCTTCTTCTCAACTTCTCTTCTATCTCTTCCTTTCCTTCTCCTCTC
TCCTTTTCTTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_g04.g1 MSMg01no448_g04.g1 CHROMAT_FILE:
MSMg01no448_g04.g1 PHD_FILE: MSMg01no448_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:39 2005
         (238 letters)



>mm_chr7_145588305_145588942
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaagcactgccctgaatctatgtgaaggagtagggggaccagatcagaatcagaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaagcactgccctgaatctatgtgaaggagtagggggaccagatcagaatcagaaat 260

                                                                       
Query: 61  agctattgatctgcagcttgctttcaagtctggtggagactgtaaaagtattaacttcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctattgatctgcagcttgctttcaagtctggtggagactgtaaaagtattaacttcga 320

                                                                       
Query: 121 ggcgatggcagccacggttgttggctgcagcgctctgcttggaggcagcgacttcaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgatggcagccacggttgttggctgcagcgctctgcttggaggcagcgacttcaggac 380

                                                                     
Query: 181 cgcgttctggacagcgcccggcgccggggaaagttgggtccaagctgtttggcttcag 238
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cgcgttctggacagcgcccggcgccggggaaagttgggtccaggctgtttggcttcag 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)