Query= MSMg01no448_j03.b1 MSMg01no448_j03.b1 CHROMAT_FILE:
MSMg01no448_j03.b1 PHD_FILE: MSMg01no448_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:53 2005
(164 letters)
>mm_chr7_102789422_102789986
Length = 565
Score = 292 bits (151), Expect = 7e-84
Identities = 160/163 (98%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 1 gacaaggattcaggctagtgaatggctgaggttccctca-ccccttagaaagtcatctac 59
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 363 gacaaggattcaggctagtgaatggctgaggttcccttacccccttagaaagtcatctac 304
Query: 60 agcattgagttcggaggatgacgaccttctccacacctaagaccactttcacacagtgac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agcattgagttcggaggatgacgaccttctccacacctaagaccactttcacacagtgac 244
Query: 120 tcagagtgttcagttgacagagacaccaggctagggaataggg 162
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 243 tcagagtgttcagtcgacagagacaccaggctagggaataggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 565
Length adjustment: 8
Effective length of query: 156
Effective length of database: 557
Effective search space: 86892
Effective search space used: 86892
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no448_j03.g1 MSMg01no448_j03.g1 CHROMAT_FILE:
MSMg01no448_j03.g1 PHD_FILE: MSMg01no448_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:53 2005
(462 letters)
>mm_chr7_102588681_102589542
Length = 862
Score = 781 bits (404), Expect = 0.0
Identities = 448/466 (96%), Gaps = 8/466 (1%)
Strand = Plus / Plus
Query: 1 tctggcctcagtctcctgagtgctcaaattacaggcttataattttcacatgctgggcat 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcctcagcctcctgagtgctcaaattacaggcttataattttcacatgctgggcat 260
Query: 61 atatagttagacag----gatcagcatgctctcatggtttaagggtccacttcactagca 116
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatacatagacacaatagatcagcatgctctcatggtttaagggtccacttcactagca 320
Query: 117 agcaaaactcttaaagagtctcaagtctgaagttctggaaaactctgagcaggggtaacc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaaactcttaaagagtctcaagtctgaagttctggaaaactctgagcaggggtaacc 380
Query: 177 tggtacaatgtttgcatctgctaagaacagcaaaggaggttattgtggtagaaataaaaa 236
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtacaatgtttacatctgctaagaacagcaaaggaggttattgtggtagaaataaaaa 440
Query: 237 catgcatatataaactggtaagtaatagaagaaggacaaagtggaaccaggagccaccat 296
|||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 catgcaga-ataaactggtaagtaatagaag---gacaaagtggaaccaggagccaccat 496
Query: 297 gaacccctgttgattgtaaggtgaacagaggcaggtagggtatatggaagcactgagcct 356
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 497 gaacccctgttgattgtgaggtgaacagaggcaggtagggtatatggtagcactgagcct 556
Query: 357 gctttgctgagttatatatcatgtctatttagaggtaagaaacaattccaaacatccaat 416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gctttgctgaattatatatcatgtctatttagaggtaagaaacaattccaaacatccaat 616
Query: 417 cttcccttaataacctattatagatttgtcttctgtgaactcatat 462
||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 cttcccttaataacctattatagatttgtcttcagtgaactcatat 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
