BAC Information

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BAC

Clone NameMSMg01-448K15
Chromosome7 (Build37)
Map Location 95,196,685 - 95,196,927
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneLOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448K15.T7 (MSMg01no448_k15.b1)MSMg01-448K15.TJ (MSMg01no448_k15.g1)
ACCAG536823AG536824
length739770
length of high quality
(start - end)
483 (38 - 520)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no448_k15.b1 PHD_FILE: MSMg01no448_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:01 2005CHROMAT_FILE: MSMg01no448_k15.g1 PHD_FILE: MSMg01no448_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
ATTATTCCCGATACACTGAACCTAATAGAAGAGAAAGTGGGGAAGAACAT
CAAACACATGGGCACAGGGAAAAATTTCCTGAACTGAACACCAATGGGTT
ATGCTCTAAGTGTACAATTCACAAATAGGACCTCATAAAATTGAAAAGTT
TCTGCAAGGCAAAGGACACTGTCAATAGGACAAAGCAGCAATCAACAGAT
TGGGGAAAAAATCTTTACCAATCCTACATCCAATACAGGGCTAATATCCA
ATATATACAAAGAAGTCAAGTAGTTAGACTCCAGAGAACCAAATAATCAT
ATTAAAAATGGGGTACAGAGATAAACAAAGAATTCTTAACCGAGAAATAC
TGAATGGCTGAGAAGCACCTAAAGAAATGTTCAACATCCTTCGTCTTCAG
GGAAATCCAAATCAAAACTACTCCGAGATTCCACCTCACAGCAGTCAAAA
TGGCTAAAACAAAAACCTCAGATGCTGGTTGGTGGTAGCACATGCCTTTA
ATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGAGTTCCAGGA
CAGCCTAGAGCTACACATAGAAACCCTGTCTCCAAAAACCCATAAACAAG
CTTATCAACCCAACCAATCCTCCGGTGACAGTATATGCCTGGCTAGGAAT
GTGCATAAAGAAGAACACTCCCTCCGTTTCCAAGTGGGA
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATCCAAATTTGTCAAAATATTAATT
GTATCCAGAATGTTCTAGCATTTTTCACTTGTAAATGTGATTAAAATGGG
ACAGTTTGGGGTTTGTAATTAAATTTAGACACAGACATGGGAAATTCTTG
CCATTTATTAAATATTATATATTTGTGATTTTTTGTGAATTTAGGTGAGA
AATATTTATTTTATACTTCTAGCTAAAATAATGTTTGCATTAATAATGGA
ATAGATTTTTAGCATGTTGTTTTTATCTCTTAGCTTCTAGTTTCTGTGAC
AATCTAACCATAACCACATACTATACAATTGTCTGCCCTGTCAGTTATTC
ATTTAACAATTTAATGTTTTTCACACAGTGCTAAGTTCTTTTCACTTAAA
TGCAAAGTAAAATCTTCCACTTTCCAAGCCTCACATGTCTATAATAGGAG
TCTGACTTAAATAATTGCACTGGGATTATAGATGCAATGTATACAGTAAT
TGGACTGCATACTATTTGCAATGGGGGCCCACAGGATAGACTTATTCCTT
AGCAAATAAAAATTGAATTGTTAACTCACCCCTTGATACACCAGTAATGA
CTGTTGCTTGAATCCACTCCTGAAGAGTCCAAAAGCGGGGCCAAACTAAC
ATGCAAAATAAAAAAAAGTTTCATTGCCCCCACACCTTCCAATTAACCAC
CCCAGATCACGCGAATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_k15.g1 MSMg01no448_k15.g1 CHROMAT_FILE:
MSMg01no448_k15.g1 PHD_FILE: MSMg01no448_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:01 2005
         (244 letters)



>mm_chr7_95196485_95197128
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatccaaatttgtcaaaatattaattgtatccagaatgttctagcatttttcacttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agatccaaatttgtcaaaatattaattgtatccagaatgttctagtatttttcacttgta 260

                                                                       
Query: 61  aatgtgattaaaatgggacagtttggggtttgtaattaaatttagacacagacatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgattaaaatgggacagtttggggtttgtaattaaatttagacacagacatgggaa 320

                                                                       
Query: 121 attcttgccatttattaaatattatatatttgtgattttttgtgaatttaggtgagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcttgccatttattaaatattatatatttgtgattttttgtgaatttaggtgagaaat 380

                                                                       
Query: 181 atttattttatacttctagctaaaataatgtttgcattaataatggaatagatttttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttattttatacttctagctaaaataatgtttgcattaataatggaatagatttttagc 440

              
Query: 241 atg 243
           |||
Sbjct: 441 atg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)