BAC Information

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BAC

Clone NameMSMg01-448N24
Chromosome7 (Build37)
Map Location 49,728,691 - 49,729,141
singlet/doubletsinglet
Overlap geneBC063263
Upstream geneEG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503
Downstream geneLOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448N24.T7 (MSMg01no448_n24.b1)MSMg01-448N24.TJ (MSMg01no448_n24.g1)
ACCAG536984AG536985
length754786
length of high quality
(start - end)
478 (52 - 529)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no448_n24.b1 PHD_FILE: MSMg01no448_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:18 2005CHROMAT_FILE: MSMg01no448_n24.g1 PHD_FILE: MSMg01no448_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCCAGGACTTTCCCGGCTATACAGAGAAACCCTGTCTCGA
AAAGCAAAACAAAACCAAAAAACAACAACAACAAAAAAAAAAGGAAAATG
AACTACATATGTACTAATGTTTCATACAGAATTATTCTGAAATCAACTAC
TAATAATGGTATAGAATTCATGTTATATTTGACTAAACTGGTAATAATTT
AAAATGTATGAACTTGTACCTGAGTAAGATTTCTCATAACCATCTAAAGT
CAAAACTGTTGCATAACATTTGTATATTTCAGTGGAACAGGATATTTTTA
TATGATGAAAAGATTACTGTTGATACTATTTGAGCTTTAAGTTTTTGTTA
CAGATTGTTTATAATGTTAAATTACCTTCTTTGTCTCGACTACAAATAAA
GAAATTGGAGCTTACGTTTACTTACTGCTGTCTTGGGATAATGAATGCCT
GTTTTATACTGGAAAGGTATCATTAATGTTAGGCATTCCATGAGTGATAA
TTCCAACAAAAACATCTCATAAAATTACAGTGGGGGAATTGGGGGCTTTT
TTATTGAATGTGGAACAAAAAATGTAGACAGTAAAATTGAATGTCTCGCC
TTGGTGGGGTGGGACATGCTCCTTATTTCCCCTTCCCGGTAGGGAGAGAA
AGTCAAAAATTTTTAATCCTTAGTCACACCCGGCCCATTTAATGAAGTAC
CTCN
TTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTGGCTGAAGAGGTGGCTC
AGCAGTTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCC
TGAAACCACATGGCGGCTCACACCATCTGTAATGGGCATCTGATGCTGTC
TTCTGGTGTGTCTGAAAACAGTGACAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGAAAGAAAGAAAGTTTTTTAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAATTCTCAACTGAGGAATAATGTATGGCTGA
TAAGCACCATAACAAAAATGCTAAACATCCTTATTCATCAGGTAAACGCA
AATCATAGCAACCCTGAAAAGCGCCCTCATTACTCTCTGAATGGCTAAGA
TAAAACTTATATCAAATCCCAATGTTGGCCTTGTTTGCGTAGAAAAACAA
CCCTCCGACTTTCCCCCCCTATAGTTGTTAATTTTTTAAACTCGGGTCTC
GATGTTTAACTTTCCCCTTATAAACTTTTTATTTTTCTTCCGGTTCCTAA
TAACATTCCCACTACCTCTGTATCTCCGCGATGCGTTAAACACCTATATT
TCCCCTCCATTATTTTACCTTCCTCTTTATCCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_n24.b1 MSMg01no448_n24.b1 CHROMAT_FILE:
MSMg01no448_n24.b1 PHD_FILE: MSMg01no448_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:18 2005
         (478 letters)



>mm_chr7_49728413_49729290
          Length = 878

 Score =  816 bits (422), Expect = 0.0
 Identities = 447/456 (98%), Gaps = 6/456 (1%)
 Strand = Plus / Minus

                                                                       
Query: 24  ggctatacagagaaaccctgtctcgaaaagcaaaacaaaaccaaaaaacaacaacaacaa 83
           ||||||||||||||||||||||||||||| |||||||||||  |||| ||| || |||||
Sbjct: 729 ggctatacagagaaaccctgtctcgaaaaacaaaacaaaac--aaaaccaa-aa-aacaa 674

                                                                       
Query: 84  -aaaaaaaaggaaaatgaactacatatgtactaatgtttcatacagaattattctgaaat 142
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caaaaaaaaggaaaatgaactacatatgtactaatgtttcatacagaattattctgaaat 614

                                                                       
Query: 143 caactactaataatggtatagaattcatgttatatttgactaaactggtaataatttaaa 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 caactactaataatggtatagaattcatgttatatttgactaaactggtaataatttaaa 554

                                                                       
Query: 203 atgtatgaacttgtacctgagtaagatttctcataaccatctaaagtcaaaactgttgca 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atgtatgaacttgtacctgagtaagatttctcataaccatctaaagtcaaaactgttgca 494

                                                                       
Query: 263 taacatttgtatatttcagtggaacaggatatttttatatgatgaaaagattactgttga 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taacatttgtatatttcagtggaacaggatatttttatatgatgaaaagattactgttga 434

                                                                       
Query: 323 tactatttgagctttaagtttttgttacagattgtttataatgttaaattaccttctttg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tactatttgagctttaagtttttgttacagattgtttataatgttaaattaccttctttg 374

                                                                       
Query: 383 tctcgactacaaataaagaaattggagcttacgtttacttactgctgtcttgggataatg 442
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 t-tcgactacaaataaagaaattggagcttacgtttacttactgctgtcttgggataatg 315

                                               
Query: 443 aatgcctgttttatactggaaaggtatcattaatgt 478
           | ||||||||||||||||||||||||||||||||||
Sbjct: 314 agtgcctgttttatactggaaaggtatcattaatgt 279



 Score = 56.8 bits (29), Expect = 3e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 24 ggctatacagagaaaccctgtctcgaaaa 52
          |||||||||||||||||||||||||||||
Sbjct: 52 ggctatacagagaaaccctgtctcgaaaa 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)