BAC Information

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BAC

Clone NameMSMg01-449C17
Chromosome7 (Build37)
Map Location 115,472,094 - 115,472,413
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492
Downstream geneOlfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449C17.T7 (MSMg01no449_c17.b1)MSMg01-449C17.TJ (MSMg01no449_c17.g1)
ACCAG537208AG537209
length735741
length of high quality
(start - end)
328 (334 - 661)268 (378 - 645)
definitionCHROMAT_FILE: MSMg01no449_c17.b1 PHD_FILE: MSMg01no449_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:42 2005CHROMAT_FILE: MSMg01no449_c17.g1 PHD_FILE: MSMg01no449_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAAGG
CGCGGAATTCTTAATTAATTACATTCAATTTAACTGCTACACCTAACACT
CAATGAACATCATAGAAGAGGGGACAGTACAATATAAGAGCCAGAAGACC
AGGATGCTTGGTACTATATTGTGTCTTCTAGACATAATAGGAAAATGACA
CTCATGACATCTCAACAGTTTGACAGAATAAACTAAAACGTAGCAATGTC
AATTACAGTTGACATGACAGCATGGGAGGAAGAAATATAATAAAATCCTA
GTCCTAGCTGAAAAACTATAGGCAGTTTTTGTAATACTAAAGGGGGAGAA
TCAGTCTTCTCCAGGGACAAACTCATAATAGGTTATCTAGTCTCAAGTGG
TCTTCCTTAATTACATATACATATCAGCAGCACTAAATGAACTCAATGGT
GTGTGTGTGTGTGTGTGTGTGTGTGTAAAACAATAATTTTAAAAGTTATA
AATTTAAGAGGGAATTAGGAGGTAAAATGAAGAGGTGGTGGAAGAATGGG
GGTAGAAATAATATGAATAGTTTGTCCATATATGAAGTCATCAACATTTA
ATTTAAAATAATGTCTATAAATGGGACTCTGTGAGATTTATCTTTTCTAC
ATTTACATGACTATTGTATTTACCACTGTTAAGGTCTTATTTAAACTGAT
ATTTTTGAGTTGGTATTATGGGTACAGATTCTCCA
NNNCGCGATGAAGTGGGAGGCCTGGNGGNCGCCTGGCTTTCAAATGGGGG
NGAACNANAGAAGGATTCCCCGAAAACGGACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCTACCTCCTTAATCATCAGGGAAATGC
AAATCAAAATAACCCTGAGATTCCACCTCACACCAGTCACAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGG
AACACTCCTTTTTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAATATTGGATAGTGTACTACCAGAGGATCCA
GCAATACCTCTCCTGTTTATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGTCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGG
GGATATTAGCCCTTTATCTTTTTTACCCAAGATATAAGATACAATTTCCT
AAACACTTGAAACTCAAGAAAAATGAAGACTGAAGCGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_c17.b1 MSMg01no449_c17.b1 CHROMAT_FILE:
MSMg01no449_c17.b1 PHD_FILE: MSMg01no449_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:42 2005
         (328 letters)



>mm_chr7_115471751_115472478
          Length = 728

 Score =  572 bits (296), Expect = e-168
 Identities = 317/328 (96%), Gaps = 8/328 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactaaagggggagaatcagtcttctccagggacaaactcataataggttatctagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atactaaagggggagaatcagtcttctccagggacaaactcataataggttatctagtct 604

                                                                       
Query: 61  caagtggtcttccttaattacatatacatatcagcagcactaaatgaactcaatggtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 603 caagtggtcttccttaattacatatacatatcagcagcactaaatgaactca-------g 551

                                                                       
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtaaaacaataattttaaaagttataaatttaagaggga 180
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 550 tg-gtgtgtgtgtgtgtgtgtgtaaaacaataattttaaaagttataaatttgagaggga 492

                                                                       
Query: 181 attaggaggtaaaatgaagaggtggtggaagaatgggggtagaaataatatgaatagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attaggaggtaaaatgaagaggtggtggaagaatgggggtagaaataatatgaatagttt 432

                                                                       
Query: 241 gtccatatatgaagtcatcaacatttaatttaaaataatgtctataaatgggactctgtg 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 gtccatatatgaagtcatcaacatttaatttaaaataatggctataaatgggactctgtg 372

                                       
Query: 301 agatttatcttttctacatttacatgac 328
           ||||||||||||||||||||| ||||||
Sbjct: 371 agatttatcttttctacatttgcatgac 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)