BAC Information

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BAC

Clone NameMSMg01-450L04
Chromosome7 (Build37)
Map Location 54,983,628 - 54,983,800
singlet/doubletsinglet
Overlap genenone
Upstream geneSaa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps
Downstream geneEG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450L04.T7 (MSMg01no450_l04.b1)MSMg01-450L04.TJ (MSMg01no450_l04.g1)
ACCAG538365AG538366
length749748
length of high quality
(start - end)
191 (123 - 313)173 (78 - 250)
definitionCHROMAT_FILE: MSMg01no450_l04.b1 PHD_FILE: MSMg01no450_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:43 2005CHROMAT_FILE: MSMg01no450_l04.g1 PHD_FILE: MSMg01no450_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCAAAATTTGCGGCGCNAAACGACTCCTAATCGAATTGAGGCGCGGAA
NCAGNGTATTACTGAAAATGGCTCTTCTCAAGAGAAAGACCACTGTGAAG
TCTCTGGCCAATCTTCATCCAAGATGGGAAGAAGAGTAGCCCACTGTTGG
TTGGGTTCTGCCCTGGCCTCCTTACCTGTATTTGAGCATGCTATTTTTAA
AAGTGAATTTACCTCAACAAAAGGAAGCTTGCAACAGAAATATCCTGTTT
TTTCCAAGTGCTACATGGTTTCTGTGGGCTTAGGAATGTCAGTGTTTCCT
ACCACAATGCCTATTACATCCCTTTCCCAGNCCTAGGNAGTAATGACTGA
GAAAATAATGTGCCATCAATACCAAACCATTGTGTGAGAGCTCTGGGTAC
ACCACAGCTAGAAAGAGTGCTACAGTGCCTGAGCACATGCTGGAGAGCAG
AAGAGGTGCCTGTATCTAACACAGAGCCAGTGGAGACTTCTAAAGGCACA
CTTCCCCTTTATGTGCTCCTCTAGATCTTTTAATACCACCTTTGAATTTA
GGACAAAGCTGGGCTTGCCGTGCCTCCTACTGGTGACACAGTGACCACAT
TCTCAACAGCCAGATCACCCCACACTCCTGTCTTGGTAGTTCCGAGCAAA
CGACTCTTTTTGTTTACAACCTCTAGGTGCTTACTGTCTTGACCGCGATC
CCTACCTCCACAATCCATTCTTTGAATATATAAATGTTAACCTTGCTCC
CACGATGCTGTGGGAGGCCTGGNGGNCGCCTGTTTCAAAACATGTAGGNN
GAACTATAGAAGTTCCAAAAAAAATTCCACATTTCTTATGGAATAAGATC
AGACCAGTTACATTTTGTAACTCCATGAATTGGTTTTGTTTCCATGAAAG
AAAAGGAGATCTAAGGTGGTTATGATTGAATATATAGTCTCCATGTCTTA
GAACTCACAGCATCTACATCCTCTGGTACGTCAAGGCTTCTGGCTGCTGG
ATTTTTCGGGCTGGAGACATGGGATCCTTCTGCTGCAGCACAGGTCATTG
AGAGTGTGTGATGTAATATGNGTTCTGGGCCTCACACCTGTCTTTGTAAA
TTGTGTATGAGTCTTATGCTATTATTAGCATAGTGAGTGTTGTGATTAGA
CAAGTCTAAAACTTTTTTGCTGAAGGTGTTATCTCATGAGAATGTCACAG
GAAACCATGGGGCTCATTTGTCTTTAGTTTTTCTGTTTTTTTTTTTCTTT
TAAAATAATTATTTAGAGGAAAAATTTTTATTGGATGTTTTCTTTCTTTA
CATTTCAAATATTTTCCCCTTTCCAGGTCTCCGCTTTGGAAGCTCCCGAT
ACTATCCTCACTCCCCCCCCCCCGACTCTATGAGGTTGTTCCCCCGAATT
TCCGCCTTGTTTTTCCCCTACACTGTGGAATCAAAAAATTTCTGGCCCAA
GGGTTATTCTCCCCACTGATATCCAATTAGTCTAATCCTCTGCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_l04.g1 MSMg01no450_l04.g1 CHROMAT_FILE:
MSMg01no450_l04.g1 PHD_FILE: MSMg01no450_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:43 2005
         (173 letters)



>mm_chr7_54983428_54984000
          Length = 573

 Score =  290 bits (150), Expect = 3e-83
 Identities = 168/174 (96%), Gaps = 2/174 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatttcttatggaataagatcagaccagttacattttgtaactccatgaattggtttt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cacatttcttatggaataagatcagaccagtgacattttgtaactccatgaattggtttt 260

                                                                       
Query: 61  gtttccatgaaagaaaaggagatctaaggtggttatgattgaatatatagtc-tccatgt 119
           |||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||
Sbjct: 261 gtttccatgaaagaaaaggagatctaagatggtaatgattgaatatatagtcctc-atgt 319

                                                                 
Query: 120 cttagaactcacagcatctacatcctctggtacgtcaaggcttctggctgctgg 173
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 cttagaactcacagcatctacatcctctggtacatcaaggcttctggctgctgg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)