Query= MSMg01no451_m14.b1 MSMg01no451_m14.b1 CHROMAT_FILE:
MSMg01no451_m14.b1 PHD_FILE: MSMg01no451_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:09 2005
(676 letters)
>mm_chr7_61477584_61478659
Length = 1076
Score = 683 bits (353), Expect = 0.0
Identities = 383/393 (97%), Gaps = 2/393 (0%)
Strand = Plus / Minus
Query: 1 agttgagagaatggcatctacacatcacatgacaaaatgtagaacaataaaacatgctca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 392 agttgagagaatggcatctacaaatcacatgacaaaatgtagaacaataaaacatgctca 333
Query: 61 gttaatgccatcccttctaacctagctttagg-tgtcagtaaaatattgaaattatttac 119
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 332 gttaatgccatcccttctaacctagctttaggct-tcagtaaaatattgaaattatttac 274
Query: 120 actattccttcttggcactgaaaggttgctctgaatgtgtcccattcccaccagctacca 179
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 273 actattccttctcggcactgaaaggttgctctgaatgtgtcccattcccgccagctacca 214
Query: 180 agactgcttaattgaaagccatttagaaaaatgttcaacatccttaatcatcagggaaat 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 213 agactgcttaattgaaagccatttagaaaaatgttcaatatccttaatcatcagggaaat 154
Query: 240 gcaaatcaaaacaaccctgagattctacctcacaccagtcagaatggctaggatcaaaaa 299
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 153 gcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggttaggatcaaaaa 94
Query: 300 ttcaggtgacagcaggtgctggctaggatgtggagaaagaggaacactcctccattgctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 93 ttcaggtgacagcaggtgctggctaggatgtggagaaagaggaacactcctccattgttg 34
Query: 360 gtaggattgcaatctggtacaaccactctggaa 392
|||||||||||| ||||||||||||||||||||
Sbjct: 33 gtaggattgcaagctggtacaaccactctggaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_m14.g1 MSMg01no451_m14.g1 CHROMAT_FILE:
MSMg01no451_m14.g1 PHD_FILE: MSMg01no451_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:10 2005
(559 letters)
>mm_chr7_61298551_61299509
Length = 959
Score = 832 bits (430), Expect = 0.0
Identities = 485/508 (95%), Gaps = 9/508 (1%)
Strand = Plus / Plus
Query: 52 ctctctctctctgtctctctctctctctctctctctcctctctctctctctgacacacac 111
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctctctctctctctctctctctctctctctctctctc-tctctctctctctgacacacac 319
Query: 112 acacacacacacacacacacacacacacaccaaaagtaaaagtgtttattttgatgagga 171
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 320 acacacacacacacacacacac--------caaaagtaaaagtgtttatgttgatgagga 371
Query: 172 ttgttgaataaaactatgactatttgaactgaacacactgctgcctacatgcggaaggaa 231
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 ttgttgaataaaactatgactatttgaactgaatacactgctgcctacatgcggaaggaa 431
Query: 232 tatgatgacttctataatcgcttcagcaacaattggaaagtagtcaacgtgtatattgag 291
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 432 tatgatgacttctgtaatcgcttcagcaacaattggaaagtagtcaacgtgcatattgag 491
Query: 292 taaaataaagggttcattaggtgtggtaggagtatccatatttagagtggcatatcatga 351
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 492 taaaataaagggttcattaggtgtggtaggagtatccatatttagaatggcatgccatga 551
Query: 352 aagtagagcttccattattatgaatttcaacctatattttcataactagtaatatttatg 411
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagtagagcttccactattatgaatttcaacctatattttcataactagtaatatttatg 611
Query: 412 aaacgcaagttgtttttaagaactaaaatcacttcagtattataaaaataagcaaatggt 471
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 aaacacaagttgtttttaagaactaaaatcacttcagtattataaaaataaggaaatggt 671
Query: 472 taaaagcacacctttctctcaaagatggctgtaaaaaccatacaagtcacgatactgttc 531
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 672 taaaagcacacctttctctcaaagatggctgtaaacaccatacaagtcacgatactgttc 731
Query: 532 aattcaatgtggagaggtgttttcagaa 559
|||||||||||| || ||||||||||||
Sbjct: 732 aattcaatgtggtgacgtgttttcagaa 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
