BAC Information

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BAC

Clone NameMSMg01-451O23
Chromosome7 (Build37)
Map Location 47,078,727 - 47,079,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451O23.T7 (MSMg01no451_o23.b1)MSMg01-451O23.TJ (MSMg01no451_o23.g1)
ACCAG539307AG539308
length768777
length of high quality
(start - end)
389 (77 - 465)595 (78 - 672)
definitionCHROMAT_FILE: MSMg01no451_o23.b1 PHD_FILE: MSMg01no451_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:21 2005CHROMAT_FILE: MSMg01no451_o23.g1 PHD_FILE: MSMg01no451_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTGATTCTTATAGAATGGCTGAGAAGCACCTAAAAAAT
GTTTAACATCCTTAGTCATCAGGAAAATGCAAATCAAAATAACCCTGAGA
TTCCACCTCACACCACACACCAGTCAGAATGGCTAAGATCAAAAACTCAG
GTGACAGCAGATGCTGGTGAGGATGAGGAGAAAGAGGAACACTCCTCCAC
TGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGACATCAATTTGGTG
GTTCCTCAGAAAATTGAACATAGTACTGCTGGAAGATCCAGCAATAACTA
TCCTGGGCATATACCCAGAAGAGGTTCCAATTTGTAATAAGGACATATGA
TCTTCTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGG
ACCCAGATATCCTTTCGACAGAAGTATTGATTCCCGAAAAACGGGTTTCA
TGGAACCCATGGGAGGCCCTCTCCCAATTTTTAAAAACACAGGGATTTTT
GGAAATTTTTTTTGGCCAAAGGGGGGGGGAACAAAAAAAAAAATACCTCC
CCCCCGGGGGGGGGGGAAAAAAACCCCCCTTCCCCCTCAATCTTTAACAN
AAATAATNAGATTGTTAATATTTTTTTCTCCTTACATTCTTTTTTTGTTC
TTCTTTTTCTTCTATTTTCTCCGCCGTTTTTAGTAAAGATTTGTTGNAAT
ATTTTGNATATTTCTTCC
NAACCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATCCGGACTGCAAGTTCCAG
GGACGCTTCTCGGAAAGTTTCAACATTTCATCCCCTGCTATGCACCAAGG
AAGTCAGAATACCAGTGTTAGTGTGTGGTACTATTGTGTGTGGCACTATT
CACAACAGCCAGGCAATAACGCCAAACAAACAGACTAGGAAGACTTGGTG
TATACACACAATAGGATTTGTTTGCTTATTTTATGTAAGAATTTTAGCAA
CACTAAACTTTACTCAAAAATCAAGTCAGTCGGTGCCCATGTTATTTCTG
CTACCCCACAAGTCCAAATTGGCATGCTGGTTAGTTTTGTCAACTTGACA
CAAGCTAGACTTGTGTGAGAAGAGGAAACCTTGTCTGAGAAAACTCCACC
CCCATTGGATTGGCCTGTAGGGCATGTTCTTGATTGATGATAGATGTGAG
AGGATCCAGACTACTATGGGTTGTGGTATCCCTGGGAAAGTAGGCCTTCG
GCATATAAAAAAGTAGACTGAGAAAGTGATAAGGAGCAAGCCAGGGAGCA
ATGTTTCTTCGAAGACCCTGCTTCAGTTCCTGCCTCCAGGTTCTTGCCTT
GAGTTCTTGCCCTGACTTCTTCCCTCAGTGATGAACTATAAGCTGTAAGG
TGGAATAAACCCTTTTCTTCTNCAGTTGTTTTTAGTCGAGGTGTTTATCA
CAGCACTGGAAAGCAACCTAATGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_o23.g1 MSMg01no451_o23.g1 CHROMAT_FILE:
MSMg01no451_o23.g1 PHD_FILE: MSMg01no451_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:21 2005
         (595 letters)



>mm_chr7_47078727_47079721
          Length = 995

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatccggactgcaagttccagggacgcttctcggaaagtttcaacatttcatcccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agcatccggactgcaagttccagggacgcttctcggaaagtttcaacatttcatcccctg 438

                                                                       
Query: 61  ctatgcaccaaggaagtcagaataccagtgttagtgtgtggtactattgtgtgtggcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctatgcaccaaggaagtcagaataccagtgttagtgtgtggtactattgtgtgtggcact 378

                                                                       
Query: 121 attcacaacagccaggcaataacgccaaacaaacagactaggaagacttggtgtatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attcacaacagccaggcaataacgccaaacaaacagactaggaagacttggtgtatacac 318

                                                                       
Query: 181 acaataggatttgtttgcttattttatgtaagaattttagcaacactaaactttactcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acaataggatttgtttgcttattttatgtaagaattttagcaacactaaactttactcaa 258

                                                                       
Query: 241 aaatcaagtcagtcggtgcccatgttatttctgctaccccacaagtccaaattggcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaatcaagtcagtcggtgcccatgttatttctgctaccccacaagtccaaattggcatgc 198

                                                                       
Query: 301 tggttagttttgtcaacttgacacaagctagacttgtgtgagaagaggaaaccttgtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tggttagttttgtcaacttgacacaagctagacttgtgtgagaagaggaaaccttgtctg 138

                                                                       
Query: 361 agaaaactccacccccattggattggcctgtagggcatgttcttgattgatgatagatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 agaaaactccacccccattggattggcctgtagggcatgttcttgattgatgatagatgt 78

                                                                       
Query: 421 gagaggatccagactactatgggttgtggtatccctgggaaagtaggccttcggcatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gagaggatccagactactatgggttgtggtatccctgggaaagtaggccttcggcatata 18

                            
Query: 481 aaaaagtagactgagaa 497
           |||||||||||||||||
Sbjct: 17  aaaaagtagactgagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)